RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	SCP2	P22307	547 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	PROZ	P22891	400 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	OR1G1	P47890	313 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	NRIP1	P48552	1158 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	KCNQ1	P51787	676 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	GRIK3	Q13003	919 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	ADAM15	Q13444	863 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	SHC4	Q6S5L8	630 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	MPZL3	Q6UWV2	235 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZBTB33	Q86T24	672 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	DDX53	Q86TM3	631 aa	Known RBP	10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	FAM178B	Q8IXR5	827 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	VPS52	Q8N1B4	723 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	MRPL43	Q8N983	215 aa	Known RBP	10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	KCNN1	Q92952	543 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	DNAJC19	Q96DA6	116 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZBTB45	Q96K62	511 aa	Predicted RBP	10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	FIZ1	Q96SL8	496 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	TCHP	Q9BT92	498 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	CDT1	Q9H211	546 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	TBX20	Q9UMR3	447 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	PCDHA7	Q9UN72	937 aa		10.08	□□□□□ -0.8
DNMT1-223	ENST00000591239	HIDE1	A8MVS5	230 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239		H3BQ06	376 aa	Predicted RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239		K7ENM7	598 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	LINC01565	O15544	149 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CLDN3	O15551	220 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CXCL14	O95715	111 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	TH	P07101	528 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	MCF2	P10911	925 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	BMP1	P13497	986 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	NMT1	P30419	496 aa	Known RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	ABCD1	P33897	745 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	LTBR	P36941	435 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	GRM5	P41594	1212 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	SMC1A	Q14683	1233 aa	Known RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	BMS1	Q14692	1282 aa	Known RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	E2F4	Q16254	413 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	LEXM	Q3ZCV2	418 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZPBP2	Q6X784	338 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	EFHB	Q8N7U6	833 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CEP120	Q8N960	986 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	BICD1	Q96G01	975 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CDCA3	Q99618	268 aa	Predicted RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CCDC94	Q9BW85	323 aa	Predicted RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	VN1R3	Q9BXE9	311 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZBP1	Q9H171	429 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CXCL16	Q9H2A7	254 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CUEDC2	Q9H467	287 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	ANKFY1	Q9P2R3	1169 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	SEL1L	Q9UBV2	794 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	STK39	Q9UEW8	545 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	PRG3	Q9Y2Y8	225 aa	Predicted RBP	10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	ATP6V1D	Q9Y5K8	247 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	CUL9	Q8IWT3	2517 aa		10.07	□□□□□ -0.8
DNMT1-223	ENST00000591239	TDRD15	B5MCY1	1934 aa	Known RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	TTC28	Q96AY4	2481 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	FSD2	A1L4K1	749 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	C2orf71	A6NGG8	1288 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239		F8W810	466 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	DLL1	O00548	723 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	HNRNPDL	O14979	420 aa	Known RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	POLR2D	O15514	142 aa	Known RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	TBX10	O75333	385 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	GLP2R	O95838	553 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	CTSA	P10619	480 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	HARS	P12081	509 aa	Known RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	GAP43	P17677	238 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	CA8	P35219	290 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	MATR3	P43243	847 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	LIG4	P49917	911 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	YARS	P54577	528 aa	Known RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	OSTN	P61366	133 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	KRT85	P78386	507 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	GTF2B	Q00403	316 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	DLX2	Q07687	328 aa	Predicted RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	MCL1	Q07820	350 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	TUSC3	Q13454	348 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	NOLC1	Q14978	699 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	NAB2	Q15742	525 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	DUSP6	Q16828	381 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	RESP18	Q5W5W9	173 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	ALKAL1	Q6UXT8	129 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	ZNF720	Q7Z2F6	126 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	SFR1	Q86XK3	245 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	IQUB	Q8NA54	791 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	LEO1	Q8WVC0	666 aa	Predicted RBP	10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	AUTS2	Q8WXX7	1259 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	RABGGTA	Q92696	567 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	STAM	Q92783	540 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	DHX58	Q96C10	678 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	CHAMP1	Q96JM3	812 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	SPATA32	Q96LK8	384 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	ACAP3	Q96P50	834 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	COLEC11	Q9BWP8	271 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	HAPLN2	Q9GZV7	340 aa		10.06	□□□□□ -0.8
DNMT1-223	ENST00000591239	TNMD	Q9H2S6	317 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms