RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 CCDC39Q9UFE4 941 aa22.43■■□□□ 1.18
SS18-224ENST00000584083 PRKAG3Q9UGI9 489 aa22.43■■□□□ 1.18
SS18-224ENST00000584083 ODF2LQ9ULJ1 636 aa22.43■■□□□ 1.18
SS18-224ENST00000584083 FAM13AO94988 1023 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 THP07101 528 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 TXLNAP40222 546 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 KCNC3Q14003 757 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 SLC39A14Q15043 492 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 ANKRD54Q6NXT1 300 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 ZBTB33Q86T24 672 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 SPRYD3Q8NCJ5 442 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 TMEM161BQ8NDZ6 487 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 RABGGTAQ92696 567 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 CASP10Q92851 521 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 ZHX3Q9H4I2 956 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 MRPL17Q9NRX2 175 aaKnown RBP22.42■■□□□ 1.18
SS18-224ENST00000584083 HCFC2Q9Y5Z7 792 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 IRAK3Q9Y616 596 aa22.42■■□□□ 1.18
SS18-224ENST00000584083 F8W810 466 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 C2CD2LO14523 706 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 PTGESO14684 152 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 SOD2P04179 222 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 URODP06132 367 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 TUSC3Q13454 348 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 STK38Q15208 465 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 PTPN14Q15678 1187 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 ADHFE1Q8IWW8 467 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 MYCT1Q8N699 235 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 KRI1Q8N9T8 703 aaKnown RBP22.41■■□□□ 1.18
SS18-224ENST00000584083 LARP4BQ92615 738 aaKnown RBP22.41■■□□□ 1.18
SS18-224ENST00000584083 ZNF396Q96N95 335 aaPredicted RBP22.41■■□□□ 1.18
SS18-224ENST00000584083 CCDC94Q9BW85 323 aaPredicted RBP22.41■■□□□ 1.18
SS18-224ENST00000584083 APOL5Q9BWW9 433 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 EMILIN2Q9BXX0 1053 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 CDT1Q9H211 546 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 CACNG4Q9UBN1 327 aa22.41■■□□□ 1.18
SS18-224ENST00000584083 USP15Q9Y4E8 981 aaPredicted RBP22.41■■□□□ 1.18
SS18-224ENST00000584083 CITO14578 2027 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 H0YCG3 227 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 MAPTP10636 758 aaKnown RBP22.4■■□□□ 1.18
SS18-224ENST00000584083 HARSP12081 509 aaKnown RBP22.4■■□□□ 1.18
SS18-224ENST00000584083 DDIT3P35638 169 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 OSTNP61366 133 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 ZP2Q05996 745 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 RRAGBQ5VZM2 374 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 TAS1R1Q7RTX1 841 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 HERC2P3Q9BVR0 1158 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 CXCL16Q9H2A7 254 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 PTPRHQ9HD43 1115 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 TFIP11Q9UBB9 837 aaKnown RBP22.4■■□□□ 1.18
SS18-224ENST00000584083 SSX2IPQ9Y2D8 614 aa22.4■■□□□ 1.18
SS18-224ENST00000584083 CASTOR2A6NHX0 329 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 TBCAO75347 108 aaKnown RBP22.39■■□□□ 1.17
SS18-224ENST00000584083 TADA2AO75478 443 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 MCF2P10911 925 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 PDIA4P13667 645 aaKnown RBP22.39■■□□□ 1.17
SS18-224ENST00000584083 HOXB8P17481 243 aaPredicted RBP22.39■■□□□ 1.17
SS18-224ENST00000584083 GRM5P41594 1212 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 YARSP54577 528 aaKnown RBP22.39■■□□□ 1.17
SS18-224ENST00000584083 KIAA1841Q6NSI8 718 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 SYCE2Q6PIF2 218 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 MPZL3Q6UWV2 235 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 HAUS6Q7Z4H7 955 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 CEP120Q8N960 986 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 BICD1Q96G01 975 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 POP1Q99575 1024 aaKnown RBP22.39■■□□□ 1.17
SS18-224ENST00000584083 PARVGQ9HBI0 331 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 STK17AQ9UEE5 414 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 ADAM28Q9UKQ2 775 aa22.39■■□□□ 1.17
SS18-224ENST00000584083 CNPP09543 421 aaKnown RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 KLRC2P26717 231 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 MATR3P43243 847 aaKnown RBP eCLIP22.38■■□□□ 1.17
SS18-224ENST00000584083 NASPP49321 788 aaPredicted RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 GLUD2P49448 558 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 NCKAP1LP55160 1127 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 HSP90AA2PQ14568 343 aaPredicted RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 TPRNQ4KMQ1 711 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 GLRA4Q5JXX5 417 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 FUT10Q6P4F1 479 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 PPFIBP1Q86W92 1011 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 ZBTB45Q96K62 511 aaPredicted RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 KLHL5Q96PQ7 755 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 PAAF1Q9BRP4 392 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 TOPORSQ9NS56 1045 aaPredicted RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 ANKFY1Q9P2R3 1169 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 MORC2Q9Y6X9 1032 aaPredicted RBP22.38■■□□□ 1.17
SS18-224ENST00000584083 C5orf42Q9H799 3197 aa22.38■■□□□ 1.17
SS18-224ENST00000584083 TOM1L1O75674 476 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 ZSCAN22P10073 491 aaPredicted RBP22.37■■□□□ 1.17
SS18-224ENST00000584083 EPCAMP16422 314 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 PROZP22891 400 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 FOXD4L6Q3SYB3 417 aaPredicted RBP22.37■■□□□ 1.17
SS18-224ENST00000584083 FOXD4L3Q6VB84 417 aaPredicted RBP22.37■■□□□ 1.17
SS18-224ENST00000584083 ZPBP2Q6X784 338 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 SLC22A17Q8WUG5 538 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 ACAP3Q96P50 834 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 PANK2Q9BZ23 570 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 GPR62Q9BZJ7 368 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 S1PR5Q9H228 398 aa22.37■■□□□ 1.17
SS18-224ENST00000584083 K7ENM7 598 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms