RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CRELD2Q6UXH1 353 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 KIAA0319LQ8IZA0 1049 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 LMO3Q8TAP4 145 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 ATRIPQ8WXE1 791 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 SYN2Q92777 582 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 RNF25Q96BH1 459 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 FAM84AQ96KN4 292 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 SPAG5Q96R06 1193 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 NFKBIZQ9BYH8 718 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 FAM49AQ9H0Q0 323 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 UPF3AQ9H1J1 476 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 IFT122Q9HBG6 1241 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 TMEM8AQ9HCN3 771 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 PRMT7Q9NVM4 692 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 ARHGAP20Q9P2F6 1191 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 SRRDQ9UH36 339 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 FBXL5Q9UKA1 691 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 REXO2Q9Y3B8 237 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 NRCAMQ92823 1304 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 GOLGA6L9A6NEM1 432 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 PMM2O15305 246 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 CLDN3O15551 220 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 ZEB2O60315 1214 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 LRRN2O75325 713 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 C6orf222P0C671 652 aaPredicted RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 CYP2C9P11712 490 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 CCND3P30281 292 aaPredicted RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 GTF2H1P32780 548 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 GPC3P51654 580 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 WNT7BP56706 349 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 JAM2P57087 298 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 PURAQ00577 322 aaKnown RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 CETN1Q12798 172 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 HIC1Q14526 733 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 HSP90AA2PQ14568 343 aaPredicted RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 SEZ6Q53EL9 994 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 TDRD12Q587J7 1177 aaKnown RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 ATF7IP2Q5U623 682 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 HGSNATQ68CP4 663 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 LMBRD2Q68DH5 695 aaPredicted RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 KRT39Q6A163 491 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 MPZL3Q6UWV2 235 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 RUFY4Q6ZNE9 571 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 TSHZ1Q6ZSZ6 1077 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 USP37Q86T82 979 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 CCDC170Q8IYT3 715 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 NLRP7Q8WX94 980 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 SCLT1Q96NL6 688 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 TCHPQ9BT92 498 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 KATNAL1Q9BW62 490 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 RBAKQ9NYW8 714 aaPredicted RBP11.4□□□□□ -0.58
SS18-217ENST00000580958 APEX2Q9UBZ4 518 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 DNAJC12Q9UKB3 198 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 MYO6Q9UM54 1294 aa11.4□□□□□ -0.58
SS18-217ENST00000580958 CNTNAP2Q9UHC6 1331 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SMIM35A0A1B0GVV1 85 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 MBLAC1A4D2B0 266 aaPredicted RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 EIF3CLB5ME19 914 aaKnown RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 KIF2AO00139 706 aaPredicted RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 GPR25O00155 361 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 OGTO15294 1046 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SEPT4O43236 478 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 FAM189A1O60320 539 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 KPNA6O60684 536 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 CSDE1O75534 798 aaKnown RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 PGK1P00558 417 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SERPING1P05155 500 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 IQCF3P0C7M6 154 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 RARBP10826 455 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 PROZP22891 400 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 HOXD10P28358 340 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 TNFSF9P41273 254 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 KIF11P52732 1056 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ZNF200P98182 395 aaPredicted RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 ARID5AQ03989 594 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 MCL1Q07820 350 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 TMEM62Q0P6H9 643 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ENOX2Q16206 610 aaKnown RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 AMHR2Q16671 573 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 FAM187BQ17R55 369 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ARHGAP44Q17R89 818 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ZNF568Q3ZCX4 644 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SLC9C1Q4G0N8 1177 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 PHLDB3Q6NSJ2 640 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ZNF410Q86VK4 478 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 CDR2LQ86X02 465 aaPredicted RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 ARHGEF19Q8IW93 802 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 BRSK2Q8IWQ3 736 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 ZNF516Q92618 1163 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SEMA4DQ92854 862 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 CCDC42Q96M95 316 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 FNBP1Q96RU3 617 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 EIF3CQ99613 913 aaKnown RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 CGRRF1Q99675 332 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 MTG1Q9BT17 334 aaPredicted RBP11.39□□□□□ -0.59
SS18-217ENST00000580958 CDT1Q9H211 546 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 DEF6Q9H4E7 631 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 SPC25Q9HBM1 224 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 PDE11AQ9HCR9 933 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 PTPRHQ9HD43 1115 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms