RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CXCL16Q9H2A7 254 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 CPSF3Q9UKF6 684 aaKnown RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 HES2Q9Y543 173 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 UMODL1Q5DID0 1318 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 RNF225M0QZC1 329 aaPredicted RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 TPM2P07951 284 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 DLATP10515 647 aaKnown RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 KRT13P13646 458 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 GCLMP48507 274 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 UBXN11Q5T124 520 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 ZNF516Q92618 1163 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 RBAKQ9NYW8 714 aaPredicted RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 PTPRJQ12913 1337 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 TLE2Q04725 743 aa27.29■■□□□ 1.96
SHMT1-207ENST00000580002 FAM212AQ96EL1 285 aa27.29■■□□□ 1.96
SHMT1-207ENST00000580002 SIK3Q9Y2K2 1263 aa27.29■■□□□ 1.96
SHMT1-207ENST00000580002 EPHB6O15197 1021 aa27.28■■□□□ 1.96
SHMT1-207ENST00000580002 LDHAP00338 332 aaKnown RBP27.28■■□□□ 1.96
SHMT1-207ENST00000580002 TPM3P06753 285 aa27.28■■□□□ 1.96
SHMT1-207ENST00000580002 STAG3L1P0CL83 205 aa27.28■■□□□ 1.96
SHMT1-207ENST00000580002 MCF2P10911 925 aa27.28■■□□□ 1.96
SHMT1-207ENST00000580002 ENOX2Q16206 610 aaKnown RBP27.28■■□□□ 1.96
SHMT1-207ENST00000580002 KIAA0391O15091 583 aaKnown RBP27.27■■□□□ 1.96
SHMT1-207ENST00000580002 FMO5P49326 533 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 MCCD1P59942 119 aaPredicted RBP27.27■■□□□ 1.96
SHMT1-207ENST00000580002 FKBP15Q5T1M5 1219 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 SPECC1LQ69YQ0 1117 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 CCDC186Q7Z3E2 898 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 ZNF710Q8N1W2 664 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 CPLX3Q8WVH0 158 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 ELMO3Q96BJ8 720 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 TMEM106CQ9BVX2 250 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 KIAA1586Q9HCI6 787 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 RNF19AQ9NV58 838 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 PADI3Q9ULW8 664 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 CXCL8P10145 99 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 SLC9A1P19634 815 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 FAAP100Q0VG06 881 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 TBX2Q13207 712 aaPredicted RBP27.27■■□□□ 1.96
SHMT1-207ENST00000580002 GPNMBQ14956 572 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 PSMD6Q15008 389 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 NOTUMQ6P988 496 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 ERGIC2Q96RQ1 377 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 ERVK-5Q9HDB9 667 aa27.27■■□□□ 1.96
SHMT1-207ENST00000580002 MGEA5O60502 916 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 ACTN1P12814 892 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 EN2P19622 333 aaPredicted RBP27.26■■□□□ 1.95
SHMT1-207ENST00000580002 LRRC26Q2I0M4 334 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 SLC27A1Q6PCB7 646 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 BRSK2Q8IWQ3 736 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 TMC2Q8TDI7 906 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 TMEM117Q9H0C3 514 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 RNF39Q9H2S5 420 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 TMX1Q9H3N1 280 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 SNTG2Q9NY99 539 aa27.26■■□□□ 1.95
SHMT1-207ENST00000580002 NCBP1Q09161 790 aaKnown RBP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 DPY19L2P1Q6NXN4 242 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 ANKRD33Q7Z3H0 272 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 NXF3Q9H4D5 531 aaKnown RBP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 C11orf49Q9H6J7 331 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 ATP11BQ9Y2G3 1177 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 A0A1W2PQC6 194 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 RBL2Q08999 1139 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 OR5B17Q8NGF7 314 aa27.25■■□□□ 1.95
SHMT1-207ENST00000580002 PCMTD1Q96MG8 357 aaPredicted RBP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 ZNF830Q96NB3 372 aaPredicted RBP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 FAM207AQ9NSI2 230 aaPredicted RBP27.25■■□□□ 1.95
SHMT1-207ENST00000580002 AXLP30530 894 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 PPP2R3AQ06190 1150 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 PCBP1Q15365 356 aaKnown RBP eCLIP27.24■■□□□ 1.95
SHMT1-207ENST00000580002 SLC10A6Q3KNW5 377 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 ANKLE1Q8NAG6 615 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 ADPGKQ9BRR6 497 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 APOL6Q9BWW8 343 aa27.24■■□□□ 1.95
SHMT1-207ENST00000580002 LACTBL1A8MY62 500 aa27.23■■□□□ 1.95
SHMT1-207ENST00000580002 GYPCP04921 128 aa27.23■■□□□ 1.95
SHMT1-207ENST00000580002 RPLP2P05387 115 aaKnown RBP27.23■■□□□ 1.95
SHMT1-207ENST00000580002 AKAP5P24588 427 aa27.23■■□□□ 1.95
SHMT1-207ENST00000580002 FXR1P51114 621 aaKnown RBP eCLIP27.23■■□□□ 1.95
SHMT1-207ENST00000580002 LSM14BQ9BX40 385 aaKnown RBP27.23■■□□□ 1.95
SHMT1-207ENST00000580002 SEZ6LQ9BYH1 1024 aa27.23■■□□□ 1.95
SHMT1-207ENST00000580002 CLTAP09496 248 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 ADKP55263 362 aaKnown RBP27.22■■□□□ 1.95
SHMT1-207ENST00000580002 PAK2Q13177 524 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 TWF2Q6IBS0 349 aaKnown RBP27.22■■□□□ 1.95
SHMT1-207ENST00000580002 SV2AQ7L0J3 742 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 LRRC8DQ7L1W4 858 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 EFCAB13Q8IY85 973 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 SMG8Q8ND04 991 aaKnown RBP27.22■■□□□ 1.95
SHMT1-207ENST00000580002 SEMA4DQ92854 862 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 SCLYQ96I15 445 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 PPP1R12CQ9BZL4 782 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 RPF1Q9H9Y2 349 aaKnown RBP27.22■■□□□ 1.95
SHMT1-207ENST00000580002 GPR182O15218 404 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 NBNO60934 754 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 CAND2O75155 1236 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 NOL4O94818 638 aa27.22■■□□□ 1.95
SHMT1-207ENST00000580002 PTMAP06454 111 aaKnown RBP27.22■■□□□ 1.95
SHMT1-207ENST00000580002 SELPP16109 830 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms