RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 C1orf112Q9NSG2 853 aa11.16□□□□□ -0.62
SS18-210ENST00000578700 PANK4Q9NVE7 773 aa11.16□□□□□ -0.62
SS18-210ENST00000578700 IFNKQ9P0W0 207 aa11.16□□□□□ -0.62
SS18-210ENST00000578700 IMPACTQ9P2X3 320 aa11.16□□□□□ -0.62
SS18-210ENST00000578700 NR2E1Q9Y466 385 aa11.16□□□□□ -0.62
SS18-210ENST00000578700 ESPNB1AK53 854 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 C2CD4DB7Z1M9 353 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 C9IYK1 514 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 FSCN2O14926 492 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 AP5Z1O43299 807 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 KLRC4O43908 158 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 HBP1O60381 514 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 P4HBP07237 508 aaKnown RBP11.15□□□□□ -0.62
SS18-210ENST00000578700 PRCPP42785 496 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 KRT17Q04695 432 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 COBLL1Q53SF7 1204 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 CES5AQ6NT32 575 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 POTEHQ6S545 545 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 KIAA0319LQ8IZA0 1049 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 ABI1Q8IZP0 508 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 METTL13Q8N6R0 699 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 TMEM105Q8N8V8 129 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 SYT2Q8N9I0 419 aaPredicted RBP11.15□□□□□ -0.62
SS18-210ENST00000578700 RDM1Q8NG50 284 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 DYDC2Q96IM9 177 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 HSD17B14Q9BPX1 270 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 XPO4Q9C0E2 1151 aaKnown RBP11.15□□□□□ -0.62
SS18-210ENST00000578700 UNC45AQ9H3U1 944 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 MFSD1Q9H3U5 465 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 ZHX3Q9H4I2 956 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 ZSWIM4Q9H7M6 989 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
SS18-210ENST00000578700 KCND2Q9NZV8 630 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 GDAQ9Y2T3 454 aa11.15□□□□□ -0.62
SS18-210ENST00000578700 MYH9P35579 1960 aaKnown RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 ARHGEF35A5YM69 484 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 WDR64B1ANS9 1081 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 VTNP04004 478 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 ASGR2P07307 311 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 SPATA31C1P0DKV0 1188 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 CD44P16070 742 aaKnown RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 GAP43P17677 238 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 PLCB3Q01970 1234 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 MTMR3Q13615 1198 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 KCNC3Q14003 757 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 CTTNQ14247 550 aaKnown RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 ECM1Q16610 540 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 FAM26FQ5R3K3 315 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 RARS2Q5T160 578 aaKnown RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 FAM160B1Q5W0V3 765 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 ZNF746Q6NUN9 644 aaPredicted RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 SWSAP1Q6NVH7 229 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 KCNT2Q6UVM3 1135 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 TMEM184AQ6ZMB5 413 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 LRRC55Q6ZSA7 311 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 STXBP4Q6ZWJ1 553 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 KCNK18Q7Z418 384 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 FAM228AQ86W67 206 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 SMAP1Q8IYB5 467 aaPredicted RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 GUF1Q8N442 669 aaKnown RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 C12orf76Q8N812 135 aaPredicted RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 FLCNQ8NFG4 579 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 CASP10Q92851 521 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 ZNF668Q96K58 619 aaPredicted RBP11.14□□□□□ -0.63
SS18-210ENST00000578700 ZNF558Q96NG5 402 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 BHMT2Q9H2M3 363 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 POMKQ9H5K3 350 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 SLC39A2Q9NP94 309 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 TMEM161AQ9NX61 479 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 LIMD1Q9UGP4 676 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 SORCS3Q9UPU3 1222 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 MAPK8IP1Q9UQF2 711 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 COL4A3BPQ9Y5P4 624 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 GVINP1Q7Z2Y8 2422 aa11.14□□□□□ -0.63
SS18-210ENST00000578700 CACNA1AO00555 2505 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 NFASCO94856 1347 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 NT5C1B-RDH14C9J2C7 533 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 EML1O00423 815 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 SLITRK3O94933 977 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 CXCL14O95715 111 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 PSAPP07602 524 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ATP1A3P13637 1013 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ZNF18P17022 549 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ZSCAN20P17040 1043 aaPredicted RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 HOXB8P17481 243 aaPredicted RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 CYP11B2P19099 503 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 CCNE1P24864 410 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 EEF1GP26641 437 aaKnown RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 QARSP47897 775 aaKnown RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 CRYBB1P53674 252 aaPredicted RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 SLC12A3P55017 1021 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 LRRC63Q05C16 580 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 STK4Q13043 487 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 ITGB3BPQ13352 177 aaPredicted RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 FAM43BQ6ZT52 329 aaPredicted RBP11.13□□□□□ -0.63
SS18-210ENST00000578700 FRMD5Q7Z6J6 570 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 UBALD2Q8IYN6 164 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 CSGALNACT2Q8N6G5 542 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 LRRC15Q8TF66 581 aa11.13□□□□□ -0.63
SS18-210ENST00000578700 CASD1Q96PB1 797 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms