RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 CXCL16Q9H2A7 254 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 TLR9Q9NR96 1032 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 PANK4Q9NVE7 773 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 HPSEQ9Y251 543 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 FAN1Q9Y2M0 1017 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 GDAQ9Y2T3 454 aa21.17■□□□□ 0.98
SS18-208ENST00000577751 NRP1O14786 923 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 CLDN3O15551 220 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 IDEP14735 1019 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 PFKFB1P16118 471 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 NAB2Q15742 525 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 XKR4Q5GH76 650 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 HERC4Q5GLZ8 1057 aaPredicted RBP21.16■□□□□ 0.98
SS18-208ENST00000577751 ALKAL1Q6UXT8 129 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 ZBTB33Q86T24 672 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.16■□□□□ 0.98
SS18-208ENST00000577751 BCL7CQ8WUZ0 217 aaPredicted RBP21.16■□□□□ 0.98
SS18-208ENST00000577751 TMEM169Q96HH4 297 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 RPS6KC1Q96S38 1066 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 C7orf25Q9BPX7 421 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 CCDC94Q9BW85 323 aaPredicted RBP21.16■□□□□ 0.98
SS18-208ENST00000577751 HAPLN2Q9GZV7 340 aa21.16■□□□□ 0.98
SS18-208ENST00000577751 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.15■□□□□ 0.98
SS18-208ENST00000577751 A0A1B0GVL5 298 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 A0A1W2PQ27 194 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 A0A1W2PQ64 194 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 A0A1W2PQD8 194 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 NOLC1Q14978 699 aaKnown RBP eCLIP21.15■□□□□ 0.98
SS18-208ENST00000577751 SKIV2LQ15477 1246 aaKnown RBP21.15■□□□□ 0.98
SS18-208ENST00000577751 DDX53Q86TM3 631 aaKnown RBP21.15■□□□□ 0.98
SS18-208ENST00000577751 CCDC65Q8IXS2 484 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 HVCN1Q96D96 273 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 MRPL44Q9H9J2 332 aaKnown RBP21.15■□□□□ 0.98
SS18-208ENST00000577751 GDPD2Q9HCC8 539 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 ANKFY1Q9P2R3 1169 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 COG5Q9UP83 839 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 CITO14578 2027 aa21.15■□□□□ 0.98
SS18-208ENST00000577751 UNC80Q8N2C7 3258 aa21.14■□□□□ 0.98
SS18-208ENST00000577751 HNRNPDLO14979 420 aaKnown RBP21.14■□□□□ 0.97
SS18-208ENST00000577751 ACTN4O43707 911 aaKnown RBP21.14■□□□□ 0.97
SS18-208ENST00000577751 THP07101 528 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 SLFN14P0C7P3 912 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 LIG4P49917 911 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 SLC39A4Q6P5W5 647 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 ADGRD2Q7Z7M1 963 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 BICD1Q96G01 975 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 ACAP3Q96P50 834 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 MARCH5Q9NX47 278 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 THEGQ9P2T0 379 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 SERTAD1Q9UHV2 236 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 CIZ1Q9ULV3 898 aaPredicted RBP21.14■□□□□ 0.97
SS18-208ENST00000577751 PCDHGC5Q9Y5F6 944 aa21.14■□□□□ 0.97
SS18-208ENST00000577751 SPTBN5Q9NRC6 3674 aaKnown RBP21.14■□□□□ 0.97
SS18-208ENST00000577751 MEFVO15553 781 aaPredicted RBP21.13■□□□□ 0.97
SS18-208ENST00000577751 CSPG5O95196 566 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 EFEMP2O95967 443 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 OR1G1P47890 313 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 CASP5P51878 434 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 YARSP54577 528 aaKnown RBP21.13■□□□□ 0.97
SS18-208ENST00000577751 OSTNP61366 133 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 HYAL1Q12794 435 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 COASYQ13057 564 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 TUSC3Q13454 348 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 MICAL1Q8TDZ2 1067 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 ATXN2LQ8WWM7 1075 aaKnown RBP21.13■□□□□ 0.97
SS18-208ENST00000577751 HLA-CQ95604 372 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 TCF25Q9BQ70 676 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 VN1R3Q9BXE9 311 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 FGFBP2Q9BYJ0 223 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 NGRNQ9NPE2 291 aaKnown RBP21.13■□□□□ 0.97
SS18-208ENST00000577751 TOPORSQ9NS56 1045 aaPredicted RBP21.13■□□□□ 0.97
SS18-208ENST00000577751 TBC1D7Q9P0N9 293 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 USP25Q9UHP3 1055 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 STYXL1Q9Y6J8 313 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 XIRP2A4UGR9 3374 aa21.13■□□□□ 0.97
SS18-208ENST00000577751 A0A0B4J269 797 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 ANKRD63C9JTQ0 380 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 NCK2O43639 380 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 FAM189A1O60320 539 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 HARSP12081 509 aaKnown RBP21.12■□□□□ 0.97
SS18-208ENST00000577751 NDUFA8P51970 172 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 ALCAMQ13740 583 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 CTC1Q2NKJ3 1217 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 CEP57L1Q8IYX8 460 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 VPS52Q8N1B4 723 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 PPP2R3CQ969Q6 453 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 PABPC5Q96DU9 382 aaKnown RBP21.12■□□□□ 0.97
SS18-208ENST00000577751 SNX27Q96L92 541 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 PPP1R10Q96QC0 940 aaKnown RBP21.12■□□□□ 0.97
SS18-208ENST00000577751 ZBP1Q9H171 429 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 STK39Q9UEW8 545 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 PCDHB13Q9Y5F0 798 aa21.12■□□□□ 0.97
SS18-208ENST00000577751 PDCD11Q14690 1871 aaKnown RBP21.11■□□□□ 0.97
SS18-208ENST00000577751 SMIM28A0A1B0GU29 152 aa21.11■□□□□ 0.97
SS18-208ENST00000577751 NR1I2O75469 434 aa21.11■□□□□ 0.97
SS18-208ENST00000577751 GCNT3O95395 438 aa21.11■□□□□ 0.97
SS18-208ENST00000577751 MYBP10242 640 aa21.11■□□□□ 0.97
SS18-208ENST00000577751 GTF2F1P35269 517 aaKnown RBP eCLIP21.11■□□□□ 0.97
SS18-208ENST00000577751 SYKP43405 635 aa21.11■□□□□ 0.97
SS18-208ENST00000577751 ASIC1P78348 528 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms