RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 AXIN1O15169 862 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 MSH4O15457 936 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 HRO43593 1189 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 C1QTNF9P0C862 333 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 CHMLP26374 656 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 HOXA11P31270 313 aaPredicted RBP12.35□□□□□ -0.43
VPS53-207ENST00000570510 LIMK1P53667 647 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 SATB1Q01826 763 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 FZD5Q13467 585 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 GRM2Q14416 872 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 UVSSAQ2YD98 709 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 UBXN11Q5T124 520 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 FAM171A1Q5VUB5 890 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 LONP2Q86WA8 852 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 FAM160A2Q8N612 972 aaPredicted RBP12.35□□□□□ -0.43
VPS53-207ENST00000570510 SMG8Q8ND04 991 aaKnown RBP12.35□□□□□ -0.43
VPS53-207ENST00000570510 PRPF31Q8WWY3 499 aaKnown RBP12.35□□□□□ -0.43
VPS53-207ENST00000570510 CRYGNQ8WXF5 182 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 MAP4K1Q92918 833 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 COL26A1Q96A83 441 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 ZFP14Q9HCL3 533 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 HCFC1R1Q9NWW0 138 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 PARP2Q9UGN5 583 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 GIT1Q9Y2X7 761 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 HES2Q9Y543 173 aa12.35□□□□□ -0.43
VPS53-207ENST00000570510 GOLGA8AA7E2F4 631 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 GOLGA8BA8MQT2 603 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 KCNK5O95279 499 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 EFEMP2O95967 443 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 TDGF1P13385 188 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 AXLP30530 894 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 CIITAP33076 1130 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 AKAP17AQ02040 695 aaKnown RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 LAMTOR4Q0VGL1 99 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 SRSF5Q13243 272 aaKnown RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 LRRC32Q14392 662 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 HSP90AA2PQ14568 343 aaPredicted RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 SF3A2Q15428 464 aaKnown RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 BMP2KLQ5H9B9 411 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 RTP2Q5QGT7 225 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 STPG1Q5TH74 334 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 TANGO2Q6ICL3 276 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 APOA5Q6Q788 366 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 SGMS1Q86VZ5 419 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 SPEM1Q8N4L4 309 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 RNF149Q8NC42 400 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 FAM200AQ8TCP9 573 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 HASPINQ8TF76 798 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 TCP11Q8WWU5 503 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 TMEM143Q96AN5 459 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 ELSPBP1Q96BH3 223 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 CCDC51Q96ER9 411 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 CLSTN3Q9BQT9 956 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 EIF2AQ9BY44 585 aaKnown RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 PLA2G2FQ9BZM2 168 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 SLKQ9H2G2 1235 aaPredicted RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 ARRDC1-AS1Q9H2J1 176 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 MINDY3Q9H8M7 445 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 MIOSQ9NXC5 875 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 DNMT3BQ9UBC3 853 aaKnown RBP12.34□□□□□ -0.43
VPS53-207ENST00000570510 PIAS3Q9Y6X2 628 aa12.34□□□□□ -0.43
VPS53-207ENST00000570510 ANKRD11Q6UB99 2663 aaPredicted RBP12.33□□□□□ -0.44
VPS53-207ENST00000570510 INO80B-WBP1J3KQ70 363 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 SGSM2O43147 1006 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 ASAP2O43150 1006 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 DKC1O60832 514 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS53-207ENST00000570510 RHOP08100 348 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 GSPT1P15170 499 aaKnown RBP12.33□□□□□ -0.44
VPS53-207ENST00000570510 GDI1P31150 447 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 ELF1P32519 619 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 OR1D2P34982 312 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PSMC5P62195 406 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 IRX6P78412 446 aaPredicted RBP12.33□□□□□ -0.44
VPS53-207ENST00000570510 FGD1P98174 961 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 ELAVL2Q12926 359 aaKnown RBP12.33□□□□□ -0.44
VPS53-207ENST00000570510 GRIK3Q13003 919 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PCBP1Q15365 356 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS53-207ENST00000570510 CCDC6Q16204 474 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PLA2G4FQ68DD2 849 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PSAPL1Q6NUJ1 521 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PIK3R5Q8WYR1 880 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 GJA10Q969M2 543 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 CPB2Q96IY4 423 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 CEP170P1Q96L14 293 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 ZMYND12Q9H0C1 365 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 CSRNP2Q9H175 543 aa12.33□□□□□ -0.44
VPS53-207ENST00000570510 PKD1L2Q7Z442 2459 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 ESYT2A0FGR8 921 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 TMEM8BA6NDV4 472 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 LRG1P02750 347 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 ZNF806P0C7X5 589 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 PTPN2P17706 415 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 AKAP5P24588 427 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 CCNE1P24864 410 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 NOVA1P51513 510 aaKnown RBP12.32□□□□□ -0.44
VPS53-207ENST00000570510 USP11P51784 963 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 FOXC1Q12948 553 aa12.32□□□□□ -0.44
VPS53-207ENST00000570510 PFKFB3Q16875 520 aaPredicted RBP12.32□□□□□ -0.44
VPS53-207ENST00000570510 ANO5Q75V66 913 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms