RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	RCN1	Q15293	331 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ECM1	Q16610	540 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ABCB5	Q2M3G0	1257 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	LGSN	Q5TDP6	509 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	C1orf146	Q5VVC0	180 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	LMBRD2	Q68DH5	695 aa	Predicted RBP	12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	PADI6	Q6TGC4	694 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	CCDC124	Q96CT7	223 aa	Known RBP	12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	PWWP2A	Q96N64	755 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	IWS1	Q96ST2	819 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	GAN	Q9H2C0	597 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ACP6	Q9NPH0	428 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	CCDC195	A0A1B0GUA6	201 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	EYA4	O95677	639 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	BMP3	P12645	472 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ATP2B4	P23634	1241 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	PGM1	P36871	562 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	MAGEA4	P43358	317 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	TMPRSS15	P98073	1019 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	SPRED3	Q2MJR0	410 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	BRDT	Q58F21	947 aa	Predicted RBP	12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	CLEC4G	Q6UXB4	293 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ALG3	Q92685	438 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	FAM20A	Q96MK3	541 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	TMEM117	Q9H0C3	514 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	TMEM206	Q9H813	350 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	MARCO	Q9UEW3	520 aa	Predicted RBP	12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	G3BP2	Q9UN86	482 aa	Known RBP	12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	NAALADL1	Q9UQQ1	740 aa		12.13	□□□□□ -0.47
CLN3-238	ENST00000569430	ESYT2	A0FGR8	921 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SRRM3	A6NNA2	597 aa	Predicted RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	LCA5L	O95447	670 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	GGPS1	O95749	300 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	RARA	P10276	462 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ANXA13	P27216	316 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	NCALD	P61601	193 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	LVRN	Q6Q4G3	990 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	CCDC17	Q96LX7	622 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ARHGEF10L	Q9HCE6	1279 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	CAPN9	O14815	690 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SGPL1	O95470	568 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	RPA1	P27694	616 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	PIK3CA	P42336	1068 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SF3B3	Q15393	1217 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SYDE2	Q5VT97	1194 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	BTNL9	Q6UXG8	535 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	MIGA2	Q7L4E1	593 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	EXOC3L1	Q86VI1	746 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	PARD3B	Q8TEW8	1205 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	LRRC15	Q8TF66	581 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	MTMR9	Q96QG7	549 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	CALN1	Q9BXU9	219 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ATXN2	Q99700	1313 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SLC16A3	O15427	465 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	TOM1L1	O75674	476 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	TRPA1	O75762	1119 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ALAS1	P13196	640 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	CREB1	P16220	341 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	TAL1	P17542	331 aa	Predicted RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	LIG4	P49917	911 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	CAV1	Q03135	178 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	TRPC3	Q13507	836 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SMAD1	Q15797	465 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	C16orf86	Q6ZW13	317 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	PDIK1L	Q8N165	341 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	PIP4K2C	Q8TBX8	421 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	RBM46	Q8TBY0	533 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ANKFY1	Q9P2R3	1169 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ANGPTL2	Q9UKU9	493 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	NEU2	Q9Y3R4	380 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430		H7C0C1	242 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	STAMBP	O95630	424 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	GH1	P01241	217 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	RALA	P11233	206 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ATP5O	P48047	213 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	PPP2R5C	Q13362	524 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	EPHA7	Q15375	998 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SCYL2	Q6P3W7	929 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	MTDH	Q86UE4	582 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	EIF1AD	Q8N9N8	165 aa	Known RBP	12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	GSDMB	Q8TAX9	411 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SLC5A5	Q92911	643 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	SLC13A1	Q9BZW2	595 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430	ZWILCH	Q9H900	591 aa		12.12	□□□□□ -0.47
CLN3-238	ENST00000569430		F5H6K3	240 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	CES2	O00748	559 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	TTC4	O95801	387 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	ENO1	P06733	434 aa	Known RBP	12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	KRT19	P08727	400 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	PAPOLA	P51003	745 aa	Known RBP	12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	NOP14	P78316	857 aa	Known RBP	12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	KLRC3	Q07444	240 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	DMP1	Q13316	513 aa	Predicted RBP	12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	AP3B2	Q13367	1082 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	RASA3	Q14644	834 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	AOC3	Q16853	763 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	DUPD1	Q68J44	220 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	CRELD2	Q6UXH1	353 aa	Predicted RBP	12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	CCDC125	Q86Z20	511 aa		12.11	□□□□□ -0.47
CLN3-238	ENST00000569430	PRELID2	Q8N945	189 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms