RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 NPHP3-ACAD11A0A0J9YXS1 232 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 THP07101 528 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 MARCKSP29966 332 aaPredicted RBP22.29■■□□□ 1.16
CLK3-225ENST00000569063 TAS1R1Q7RTX1 841 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 PPFIBP1Q86W92 1011 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 SLC22A17Q8WUG5 538 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 RAD54LQ92698 747 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 EMILIN2Q9BXX0 1053 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 CXCL16Q9H2A7 254 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 LARSQ9P2J5 1176 aaKnown RBP22.29■■□□□ 1.16
CLK3-225ENST00000569063 GDAQ9Y2T3 454 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 C5orf42Q9H799 3197 aa22.29■■□□□ 1.16
CLK3-225ENST00000569063 BDP1A6H8Y1 2624 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 NCOR1O75376 2440 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 F8W810 466 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 PI4K2BG5E9Z4 385 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 MAPTP10636 758 aaKnown RBP22.28■■□□□ 1.16
CLK3-225ENST00000569063 PROZP22891 400 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 NAB2Q15742 525 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 TPRNQ4KMQ1 711 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 GPBP1Q86WP2 473 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 HSCBQ8IWL3 235 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 RASSF8Q8NHQ8 419 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 KCNN1Q92952 543 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 EPSTI1Q96J88 318 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 KLHL5Q96PQ7 755 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 REEP2Q9BRK0 252 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 TARS2Q9BW92 718 aaKnown RBP22.28■■□□□ 1.16
CLK3-225ENST00000569063 CDT1Q9H211 546 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 EPHX3Q9H6B9 360 aa22.28■■□□□ 1.16
CLK3-225ENST00000569063 H0YCG3 227 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 ABLIM1O14639 778 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 BRD1O95696 1058 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 URODP06132 367 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 CNPP09543 421 aaKnown RBP22.27■■□□□ 1.16
CLK3-225ENST00000569063 DDIT3P35638 169 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 GRM5P41594 1212 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 CEBPZQ03701 1054 aaKnown RBP22.27■■□□□ 1.16
CLK3-225ENST00000569063 STRN3Q13033 797 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 MCM6Q14566 821 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 HSP90AA2PQ14568 343 aaPredicted RBP22.27■■□□□ 1.16
CLK3-225ENST00000569063 SLC39A14Q15043 492 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 ZNF568Q3ZCX4 644 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 KIAA0319Q5VV43 1072 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 USP49Q70CQ1 688 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 USP28Q96RU2 1077 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 C1QTNF1Q9BXJ1 281 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 CHST7Q9NS84 486 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 DZANK1Q9NVP4 752 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 ADAM28Q9UKQ2 775 aa22.27■■□□□ 1.16
CLK3-225ENST00000569063 MCF2P10911 925 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 PDIA4P13667 645 aaKnown RBP22.26■■□□□ 1.15
CLK3-225ENST00000569063 EPCAMP16422 314 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 SCP2P22307 547 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 GLUD2P49448 558 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 ZNF131P52739 623 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 NCKAP1LP55160 1127 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 DSG1Q02413 1049 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 CACNB1Q02641 598 aaPredicted RBP22.26■■□□□ 1.15
CLK3-225ENST00000569063 ITIH3Q06033 890 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 DHX8Q14562 1220 aaKnown RBP22.26■■□□□ 1.15
CLK3-225ENST00000569063 CBX2Q14781 532 aaPredicted RBP22.26■■□□□ 1.15
CLK3-225ENST00000569063 SPECC1Q5M775 1068 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 FUT10Q6P4F1 479 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 MPZL3Q6UWV2 235 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 GPR65Q8IYL9 337 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 CLIC6Q96NY7 704 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 PAAF1Q9BRP4 392 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 PHF7Q9BWX1 381 aaPredicted RBP22.26■■□□□ 1.15
CLK3-225ENST00000569063 GPR62Q9BZJ7 368 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 ADAM7Q9H2U9 754 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 CACNG4Q9UBN1 327 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 CCDC39Q9UFE4 941 aa22.26■■□□□ 1.15
CLK3-225ENST00000569063 CASTOR2A6NHX0 329 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 LOC730098B7Z3J9 87 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 TADA2AO75478 443 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 TOM1L1O75674 476 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 KLRC2P26717 231 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 CLCN4P51793 760 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 XKR4Q5GH76 650 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 ALKAL1Q6UXT8 129 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 ZPBP2Q6X784 338 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 CEP120Q8N960 986 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 LARP4BQ92615 738 aaKnown RBP22.25■■□□□ 1.15
CLK3-225ENST00000569063 RABGGTAQ92696 567 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 PPP1R10Q96QC0 940 aaKnown RBP22.25■■□□□ 1.15
CLK3-225ENST00000569063 TCHPQ9BT92 498 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 CCDC94Q9BW85 323 aaPredicted RBP22.25■■□□□ 1.15
CLK3-225ENST00000569063 APOL5Q9BWW9 433 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 RXFP1Q9HBX9 757 aa22.25■■□□□ 1.15
CLK3-225ENST00000569063 TOPORSQ9NS56 1045 aaPredicted RBP22.25■■□□□ 1.15
CLK3-225ENST00000569063 C2CD2LO14523 706 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 NASPP49321 788 aaPredicted RBP22.24■■□□□ 1.15
CLK3-225ENST00000569063 YARSP54577 528 aaKnown RBP22.24■■□□□ 1.15
CLK3-225ENST00000569063 USP41Q3LFD5 358 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 KIAA1841Q6NSI8 718 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 CES5AQ6NT32 575 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 HAUS6Q7Z4H7 955 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 ZBTB33Q86T24 672 aa22.24■■□□□ 1.15
CLK3-225ENST00000569063 MYCT1Q8N699 235 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms