RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 STRCP1A6NGW2 1772 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 EXOC1LA0A1B0GW35 172 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 GTPBP10A4D1E9 387 aaKnown RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 SNX3O60493 162 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 CCDC6Q16204 474 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 APOBEC3HQ6NTF7 200 aaKnown RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 OTOP1Q7RTM1 612 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 ATXN2LQ8WWM7 1075 aaKnown RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 C11orf70Q9BRQ4 267 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 POLR3CQ9BUI4 534 aaPredicted RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 WNT8AQ9H1J5 351 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 ALG13Q9NP73 1137 aaKnown RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 TNNI1P19237 187 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 HAUS6Q7Z4H7 955 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 ZNF317Q96PQ6 595 aaPredicted RBP15.48■□□□□ 0.07
VPS35-210ENST00000568784 SAYSD1Q9NPB0 183 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 VAV3Q9UKW4 847 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 NUDT17P0C025 328 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 ALAS1P13196 640 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 TAF11Q15544 211 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 CLUL1Q15846 466 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 HHATQ5VTY9 493 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 FOXR2Q6PJQ5 311 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 PAGR1Q9BTK6 254 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 TMEM117Q9H0C3 514 aa15.48■□□□□ 0.07
VPS35-210ENST00000568784 PPIP5K2O43314 1243 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 PDHA1P08559 390 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 EIF2AK2P19525 551 aaKnown RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 ZBTB16Q05516 673 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 PLA2G4FQ68DD2 849 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ZDHHC14Q8IZN3 488 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ERP27Q96DN0 273 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 WRAP73Q9P2S5 460 aaPredicted RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 C5orf60A6NFR6 353 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 EIF3DO15371 548 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS35-210ENST00000568784 ASAP2O43150 1006 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 DNAJC8O75937 253 aaPredicted RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 CA4P22748 312 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 CETN2P41208 172 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 SOX10P56693 466 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 POU5F1Q01860 360 aaKnown RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 Q4G0T1 1027 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 TMEM237Q96Q45 408 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ARHGEF10LQ9HCE6 1279 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 DCTN4Q9UJW0 460 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 STK24Q9Y6E0 443 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 NCANO14594 1321 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 IGKV6D-41A0A0C4DH26 115 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 TESPA1A2RU30 521 aaPredicted RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 KRT16P08779 473 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 EMC10Q5UCC4 262 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ARHGEF18Q6ZSZ5 1173 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ACSF2Q96CM8 615 aaPredicted RBP15.47■□□□□ 0.07
VPS35-210ENST00000568784 MKNK1Q9BUB5 465 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 NYAP2Q9P242 653 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ARL2BPQ9Y2Y0 163 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 ARAP2Q8WZ64 1704 aa15.47■□□□□ 0.07
VPS35-210ENST00000568784 GJB6O95452 261 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 TARSP26639 723 aaKnown RBP15.46■□□□□ 0.07
VPS35-210ENST00000568784 GBP1P32455 592 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 NSFP46459 744 aaKnown RBP15.46■□□□□ 0.07
VPS35-210ENST00000568784 COPS2P61201 443 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 DYNLT1P63172 113 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 RNASELQ05823 741 aaKnown RBP15.46■□□□□ 0.07
VPS35-210ENST00000568784 MIEF2Q96C03 454 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 PPP1R12CQ9BZL4 782 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 DOT1LQ8TEK3 1739 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 CYP3A7-CYP3A51PA0A087WV96 503 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 HNRNPDLO14979 420 aaKnown RBP15.46■□□□□ 0.07
VPS35-210ENST00000568784 PAEPP09466 180 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 CYP3A7P24462 503 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 PTGIRP43119 386 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 IZUMO3Q5VZ72 239 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 ERICH1Q86X53 443 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 WDR11Q9BZH6 1224 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 YIPF3Q9GZM5 350 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 EPB41L4BQ9H329 900 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 SHANK3Q9BYB0 1731 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 SRRM3A6NNA2 597 aaPredicted RBP15.46■□□□□ 0.07
VPS35-210ENST00000568784 GOLGA8RI6L899 631 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 GHRP10912 638 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 IL9RQ01113 521 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 ITIH4Q14624 930 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 SNF8Q96H20 258 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 FNBP1Q96RU3 617 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 HSD17B14Q9BPX1 270 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 TUFT1Q9NNX1 390 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 DONSONQ9NYP3 566 aa15.46■□□□□ 0.07
VPS35-210ENST00000568784 CFAP73A6NFT4 308 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 RALAP11233 206 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 GYS1P13807 737 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 NCALDP61601 193 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 EPS8L1Q8TE68 723 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 KLF6Q99612 283 aaPredicted RBP15.46■□□□□ 0.06
VPS35-210ENST00000568784 CCPG1Q9ULG6 757 aa15.46■□□□□ 0.06
VPS35-210ENST00000568784 ENO4A6NNW6 628 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 LACTB2Q53H82 288 aaPredicted RBP15.45■□□□□ 0.06
VPS35-210ENST00000568784 SYCP2LQ5T4T6 812 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 DPY19L2P1Q6NXN4 242 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 TAS1R2Q8TE23 839 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms