RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 ZNF507Q8TCN5 953 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 POMGNT1Q8WZA1 660 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 HPS3Q969F9 1004 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 LRCH3Q96II8 777 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 ACAP3Q96P50 834 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 CASD1Q96PB1 797 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 RNF19AQ9NV58 838 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 SNTG2Q9NY99 539 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 GDAQ9Y2T3 454 aa13.29□□□□□ -0.28
SF3B3-208ENST00000567250 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.29□□□□□ -0.28
SF3B3-208ENST00000567250 TRANK1O15050 2925 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 A0A0B4J269 797 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 ARL5CA6NH57 179 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 MEIS3P2A8K0S8 358 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 OFD1O75665 1012 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 CLTAP09496 248 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 AKAP5P24588 427 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 CTNNB1P35222 781 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 PPM1AP35813 382 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 PPP1R2P41236 205 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 GATMP50440 423 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 TAP1Q03518 808 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 PPP2R3AQ06190 1150 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 KCNA1Q09470 495 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 STK4Q13043 487 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 STIM1Q13586 685 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 KNOP1Q1ED39 458 aaKnown RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 ZNF658Q5TYW1 1059 aaPredicted RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 SPATA20Q8TB22 786 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 SCFD1Q8WVM8 642 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 CLP1Q92989 425 aaKnown RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 ZBTB45Q96K62 511 aaPredicted RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 FAM193BQ96PV7 902 aaPredicted RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 GAD1Q99259 594 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 NUP62CLQ9H1M0 184 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 ZNF576Q9H609 170 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 AGO2Q9UKV8 859 aaKnown RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 PCDHA5Q9Y5H7 936 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 MRPL42Q9Y6G3 142 aaKnown RBP13.28□□□□□ -0.28
SF3B3-208ENST00000567250 STYXL1Q9Y6J8 313 aa13.28□□□□□ -0.28
SF3B3-208ENST00000567250 PLXNA4Q9HCM2 1894 aa13.27□□□□□ -0.28
SF3B3-208ENST00000567250 VASPP50552 380 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 SCNN1GP51170 649 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 OSTNP61366 133 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 ERVK-21P61565 698 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 POU5F1Q01860 360 aaKnown RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 SLC39A4Q6P5W5 647 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 CD302Q8IX05 232 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 NELFCDQ8IXH7 590 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 GUF1Q8N442 669 aaKnown RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 CEP120Q8N960 986 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 TRIML1Q8N9V2 468 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 GLIS3Q8NEA6 775 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 SNX27Q96L92 541 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 C11orf84Q9BUA3 381 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 PLVAPQ9BX97 442 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 CLSTN2Q9H4D0 955 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 RPF1Q9H9Y2 349 aaKnown RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 TYW1Q9NV66 732 aaKnown RBP13.27□□□□□ -0.29
SF3B3-208ENST00000567250 SLC38A7Q9NVC3 462 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 TBC1D13Q9NVG8 400 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 PCDHB12Q9Y5F1 795 aa13.27□□□□□ -0.29
SF3B3-208ENST00000567250 CHD7Q9P2D1 2997 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 ANKRD63C9JTQ0 380 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 C5orf67F2Z3F1 127 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 XPOTO43592 962 aaKnown RBP13.26□□□□□ -0.29
SF3B3-208ENST00000567250 ZC3H11AO75152 810 aaKnown RBP eCLIP13.26□□□□□ -0.29
SF3B3-208ENST00000567250 RB1P06400 928 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 THP07101 528 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 COBLL1Q53SF7 1204 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 TMEM192Q8IY95 271 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 GPD1LQ8N335 351 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 FBXO22Q8NEZ5 403 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 P2RX5Q93086 422 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 ZFP42Q96MM3 310 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 ZNF558Q96NG5 402 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 TSPAN18Q96SJ8 248 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 TMEM175Q9BSA9 504 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 PLEKHA5Q9HAU0 1116 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 KIAA1586Q9HCI6 787 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 AGPAT3Q9NRZ7 376 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 CNTN3Q9P232 1028 aa13.26□□□□□ -0.29
SF3B3-208ENST00000567250 TISP43B9A030 160 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 PDXKO00764 312 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 CALUO43852 315 aaPredicted RBP13.25□□□□□ -0.29
SF3B3-208ENST00000567250 EXTL3O43909 919 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 IL18RAPO95256 599 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 POMCP01189 267 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 CXCL8P10145 99 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 ADSSP30520 456 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 MCM4P33991 863 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 ALDH7A1P49419 539 aaKnown RBP13.25□□□□□ -0.29
SF3B3-208ENST00000567250 TUSC3Q13454 348 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 CAMK4Q16566 473 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 EPC2Q52LR7 807 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 C12orf56Q8IXR9 622 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 COLGALT1Q8NBJ5 622 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 ARNTL2Q8WYA1 636 aa13.25□□□□□ -0.29
SF3B3-208ENST00000567250 SYAP1Q96A49 352 aaPredicted RBP13.25□□□□□ -0.29
SF3B3-208ENST00000567250 CBWD1Q9BRT8 395 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms