RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 FUT10Q6P4F1 479 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TMC5Q6UXY8 1006 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TRIM67Q6ZTA4 783 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TAS1R3Q7RTX0 852 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 CABP7Q86V35 215 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 NECTIN4Q96NY8 510 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 RXFP1Q9HBX9 757 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TSHZ2Q9NRE2 1034 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 ADAM28Q9UKQ2 775 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 PDCD11Q14690 1871 aaKnown RBP11.93□□□□□ -0.5
VPS39-208ENST00000564994 DOCK8Q8NF50 2099 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 KMT2EQ8IZD2 1858 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 VWA3AA6NCI4 1184 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 CASTOR2A6NHX0 329 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 CCDC169A6NNP5 214 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 K7ERI5 159 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 NR1I2O75469 434 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 PLA2G5P39877 138 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 MTHFRP42898 656 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 TUSC3Q13454 348 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 HSP90AA2PQ14568 343 aaPredicted RBP11.92□□□□□ -0.5
VPS39-208ENST00000564994 ZRSR1Q15695 479 aaKnown RBP11.92□□□□□ -0.5
VPS39-208ENST00000564994 PTPN21Q16825 1174 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 ATAT1Q5SQI0 421 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 LARP1BQ659C4 914 aaKnown RBP11.92□□□□□ -0.5
VPS39-208ENST00000564994 GPR149Q86SP6 731 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 CEP120Q8N960 986 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 RIPOR3Q96MK2 946 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 PLIN2Q99541 437 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 ADPGKQ9BRR6 497 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 SFXN1Q9H9B4 322 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 ARHGAP28Q9P2N2 729 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 SSX2IPQ9Y2D8 614 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 GDAQ9Y2T3 454 aa11.92□□□□□ -0.5
VPS39-208ENST00000564994 ARIH1Q9Y4X5 557 aaPredicted RBP11.92□□□□□ -0.5
VPS39-208ENST00000564994 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.92□□□□□ -0.5
VPS39-208ENST00000564994 PHLPP2Q6ZVD8 1323 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 TMEM221A6NGB7 291 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 SFI1A8K8P3 1242 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 M0R296 226 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 TADA2AO75478 443 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 KIF4AO95239 1232 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 THP07101 528 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 ADH1AP07327 375 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 MYBP10242 640 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 IGFBP6P24592 240 aaPredicted RBP11.91□□□□□ -0.5
VPS39-208ENST00000564994 RAD51AP2Q09MP3 1159 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 CUL4AQ13619 759 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 USP41Q3LFD5 358 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 DCAF4L1Q3SXM0 396 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 TMEM119Q4V9L6 283 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 RTP2Q5QGT7 225 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 ARL6IP4Q66PJ3 421 aaKnown RBP11.91□□□□□ -0.5
VPS39-208ENST00000564994 LRRC15Q8TF66 581 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 HASPINQ8TF76 798 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 ACO2Q99798 780 aaKnown RBP11.91□□□□□ -0.5
VPS39-208ENST00000564994 CDT1Q9H211 546 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 TMEM134Q9H6X4 195 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 PTPRHQ9HD43 1115 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 MAN1C1Q9NR34 630 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 TNFSF13BQ9Y275 285 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 NR2E1Q9Y466 385 aa11.91□□□□□ -0.5
VPS39-208ENST00000564994 PIEZO1Q92508 2521 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 NPHP3-ACAD11A0A0J9YXS1 232 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 ABLIM1O14639 778 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 SPATA31D3P0C874 917 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 RPL17P18621 184 aaKnown RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 GUCY2CP25092 1073 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 SLC12A3P55017 1021 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 GRIN1Q05586 938 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 DMP1Q13316 513 aaPredicted RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 GLRA4Q5JXX5 417 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 PRSS55Q6UWB4 352 aaPredicted RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 SPATA31D4Q6ZUB0 917 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 BMP8AQ7Z5Y6 402 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 PALB2Q86YC2 1186 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 GLYCTKQ8IVS8 523 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 SYT2Q8N9I0 419 aaPredicted RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 RIN2Q8WYP3 895 aaPredicted RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 FAM122AQ96E09 287 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 ASIC4Q96FT7 647 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 DRC1Q96MC2 740 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 PPP1R10Q96QC0 940 aaKnown RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 NTPCRQ9BSD7 190 aaKnown RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 TARS2Q9BW92 718 aaKnown RBP11.9□□□□□ -0.5
VPS39-208ENST00000564994 SMOC2Q9H3U7 446 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 C17orf75Q9HAS0 396 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 KMT5AQ9NQR1 393 aa11.9□□□□□ -0.5
VPS39-208ENST00000564994 SF3B1O75533 1304 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS39-208ENST00000564994 SPDYE4A6NLX3 237 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 SLC16A4O15374 487 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 MEFVO15553 781 aaPredicted RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 TGM5O43548 720 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 RFPL2O75678 378 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 GLUD1P00367 558 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ASGR2P07307 311 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 PLA2G4BP0C869 781 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 PROZP22891 400 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 GRM5P41594 1212 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 OSTNP61366 133 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms