RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RHOT2Q8IXI1 618 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 ATG4CQ96DT6 458 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 KMT5AQ9NQR1 393 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 TBX20Q9UMR3 447 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 RTN2O75298 545 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 ASNSP08243 561 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 CHN1P15882 459 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 CREB1P16220 341 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 PTGIRP43119 386 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 ACOT2P49753 483 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 LONRF1Q17RB8 773 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 SWSAP1Q6NVH7 229 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 SLC39A4Q6P5W5 647 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 TAX1BP1Q86VP1 789 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 ANAPC7Q9UJX3 599 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 COL4A5P29400 1685 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 PHF2O75151 1096 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 PEX5P50542 639 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 SATB1Q01826 763 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 MTMR3Q13615 1198 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 NFIL3Q16649 462 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 KCNV1Q6PIU1 500 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 SAMD7Q7Z3H4 446 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 SLC9A9Q8IVB4 645 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 TMEM161BQ8NDZ6 487 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 NEK9Q8TD19 979 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 ZKSCAN4Q969J2 545 aaPredicted RBP14.47□□□□□ -0.09
CLK3-215ENST00000564353 ADAM33Q9BZ11 813 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 CHST7Q9NS84 486 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 STK32BQ9NY57 414 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 CTNNAL1Q9UBT7 734 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 USTQ9Y2C2 406 aa14.47□□□□□ -0.09
CLK3-215ENST00000564353 CENPFP49454 3210 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 TRAPPC3O43617 180 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 PPFIA2O75334 1257 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 DPEP1P16444 411 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 ANXA13P27216 316 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 CXCL9Q07325 125 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 HP1BP3Q5SSJ5 553 aaPredicted RBP14.46□□□□□ -0.09
CLK3-215ENST00000564353 RNF207Q6ZRF8 634 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 SEPT14Q6ZU15 432 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 SV2AQ7L0J3 742 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 FAM71AQ8IYT1 594 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 PARD3BQ8TEW8 1205 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 CABS1Q96KC9 395 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 GMLQ99445 158 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 RPAP3Q9H6T3 665 aaPredicted RBP14.46□□□□□ -0.09
CLK3-215ENST00000564353 KCND2Q9NZV8 630 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 UBIAD1Q9Y5Z9 338 aa14.46□□□□□ -0.09
CLK3-215ENST00000564353 PFASO15067 1338 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 ZNF862O60290 1169 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 HNRNPH1P31943 449 aaKnown RBP14.46□□□□□ -0.1
CLK3-215ENST00000564353 PDE6CP51160 858 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 GTF2BQ00403 316 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 DMP1Q13316 513 aaPredicted RBP14.46□□□□□ -0.1
CLK3-215ENST00000564353 KRT39Q6A163 491 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 ARFGAP2Q8N6H7 521 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 TTLL6Q8N841 843 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 HELQQ8TDG4 1101 aa14.46□□□□□ -0.1
CLK3-215ENST00000564353 SEPT9Q9UHD8 586 aaPredicted RBP14.46□□□□□ -0.1
CLK3-215ENST00000564353 UBE4BO95155 1302 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 GOLGA6L7A0A1B0GV03 622 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 BHMG1C9JSJ3 638 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 RGS16O15492 202 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 MFAP3P55082 362 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 TRAF1Q13077 416 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 MTERF2Q49AM1 385 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 ZFYVE27Q5T4F4 411 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 SLC13A5Q86YT5 568 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 CCDC50Q8IVM0 306 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 SEC14L1Q92503 715 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 ZBTB45Q96K62 511 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 CCDC114Q96M63 670 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 NAP1L3Q99457 506 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 PRMT1Q99873 361 aaKnown RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 PDCD2LQ9BRP1 358 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 RAB20Q9NX57 234 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 ASIC3Q9UHC3 531 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 TBK1Q9UHD2 729 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 SYNGAP1Q96PV0 1343 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 RRM1P23921 792 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 CHKAP35790 457 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 MNAT1P51948 309 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 BIRC3Q13489 604 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 ZBTB41Q5SVQ8 909 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 TMEM143Q96AN5 459 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 SEC16BQ96JE7 1060 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 ZNF668Q96K58 619 aaPredicted RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 PABPC3Q9H361 631 aaKnown RBP14.45□□□□□ -0.1
CLK3-215ENST00000564353 CD2APQ9Y5K6 639 aa14.45□□□□□ -0.1
CLK3-215ENST00000564353 TNNI1P19237 187 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 COILP38432 576 aaPredicted RBP14.44□□□□□ -0.1
CLK3-215ENST00000564353 PSMC5P62195 406 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 PCNX4Q63HM2 1172 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 ACSF2Q96CM8 615 aaPredicted RBP14.44□□□□□ -0.1
CLK3-215ENST00000564353 NT5C1BQ96P26 610 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 OSBPL7Q9BZF2 842 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 ANKFY1Q9P2R3 1169 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 RASAL2Q9UJF2 1139 aa14.44□□□□□ -0.1
CLK3-215ENST00000564353 TTC7AQ9ULT0 858 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms