RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CWC15Q9P013 229 aaKnown RBP5.84□□□□□ -1.47
VPS35-205ENST00000563984 FAM184BQ9ULE4 1060 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 RABGAP1Q9Y3P9 1069 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 SLC30A1Q9Y6M5 507 aa5.84□□□□□ -1.47
VPS35-205ENST00000563984 RAD50Q92878 1312 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 A0A1W2PRQ8 180 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 TULP2O00295 520 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 TBX3O15119 743 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 MUSKO15146 869 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 PDGFRBP09619 1106 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 SCNN1BP51168 640 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 HGFACQ04756 655 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 KLF10Q13118 480 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 DUSP8Q13202 625 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 SART3Q15020 963 aaKnown RBP5.83□□□□□ -1.48
VPS35-205ENST00000563984 R3HDM1Q15032 1099 aaKnown RBP5.83□□□□□ -1.48
VPS35-205ENST00000563984 SPDYAQ5MJ70 313 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 USP51Q70EK9 711 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 POLNQ7Z5Q5 900 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 ELOA2Q8IYF1 753 aaPredicted RBP5.83□□□□□ -1.48
VPS35-205ENST00000563984 MYOCDQ8IZQ8 938 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 FUKQ8N0W3 1084 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 NXPE1Q8N323 547 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 C7orf31Q8N865 590 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 FAM184AQ8NB25 1140 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 OR5AN1Q8NGI8 311 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 TBC1D22AQ8WUA7 517 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 UIMC1Q96RL1 719 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 TARS2Q9BW92 718 aaKnown RBP5.83□□□□□ -1.48
VPS35-205ENST00000563984 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.83□□□□□ -1.48
VPS35-205ENST00000563984 DCAF16Q9NXF7 216 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 TMOD4Q9NZQ9 345 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 IP6K2Q9UHH9 426 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 DENND2AQ9ULE3 1009 aa5.83□□□□□ -1.48
VPS35-205ENST00000563984 SLC26A4O43511 780 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 AMHP03971 560 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 CAPN2P17655 700 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 COMTP21964 271 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 PSMA3P25788 255 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 CD40P25942 277 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 KCNJ4P48050 445 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 RBM5P52756 815 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS35-205ENST00000563984 OCRLQ01968 901 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 ADCY2Q08462 1091 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 HNRNPA0Q13151 305 aaKnown RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 LRRC32Q14392 662 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 PCBP1Q15365 356 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS35-205ENST00000563984 DDB1Q16531 1140 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 PLEKHG4Q58EX7 1191 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 ESRP1Q6NXG1 681 aaKnown RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 PDXDC1Q6P996 788 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 CPLX2Q6PUV4 134 aaKnown RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 KANSL1Q7Z3B3 1105 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 BMP8AQ7Z5Y6 402 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 CHTF18Q8WVB6 975 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 EDAQ92838 391 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 NOL10Q9BSC4 688 aaKnown RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 MMTAG2Q9BU76 263 aaKnown RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 PLA2G12BQ9BX93 195 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 VPS11Q9H270 941 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 RABL2AQ9UBK7 228 aaPredicted RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 ING1Q9UK53 422 aaPredicted RBP5.82□□□□□ -1.48
VPS35-205ENST00000563984 ITM2BQ9Y287 266 aa5.82□□□□□ -1.48
VPS35-205ENST00000563984 EIF4G1Q04637 1599 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 ZNF891A8MT65 544 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 FAM25EA8MYX2 175 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 KIF3BO15066 747 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 CAND2O75155 1236 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 E2F6O75461 281 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 PRPF6O94906 941 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 HSPA5P11021 654 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 HOXD10P28358 340 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 GNALP38405 381 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 KPNA1P52294 538 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 ANTXR2P58335 489 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 TRAF1Q13077 416 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 ADAM15Q13444 863 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 BIRC3Q13489 604 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 PRKD1Q15139 912 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 SYCP2LQ5T4T6 812 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 GPR158Q5T848 1215 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 ANKRD45Q5TZF3 282 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 PPP4R4Q6NUP7 873 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 SUGP1Q8IWZ8 645 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 CLASRPQ8N2M8 674 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 SMC1BQ8NDV3 1235 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 OR14K1Q8NGZ2 314 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 RABGGTAQ92696 567 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 NKD2Q969F2 451 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 SLC7A6OSQ96CW6 309 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 OR14A2Q96R54 314 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 XPO4Q9C0E2 1151 aaKnown RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 PITHD1Q9GZP4 211 aaPredicted RBP5.81□□□□□ -1.48
VPS35-205ENST00000563984 HAPLN2Q9GZV7 340 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 SLC6A15Q9H2J7 730 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 ZMAT4Q9H898 229 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS35-205ENST00000563984 VEZTQ9HBM0 779 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 TRPV5Q9NQA5 729 aa5.81□□□□□ -1.48
VPS35-205ENST00000563984 EXOC1Q9NV70 894 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms