RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ACKR2O00590 384 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 PTGESO14684 152 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 N4BP3O15049 544 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 TGM5O43548 720 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 PAPLNO95428 1278 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 EDN1P05305 212 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 NAMPTP43490 491 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 RBM25P49756 843 aaKnown RBP17.39■□□□□ 0.37
CLK3-211ENST00000563297 PRPF4BQ13523 1007 aaKnown RBP17.39■□□□□ 0.37
CLK3-211ENST00000563297 TDGQ13569 410 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 MAPK6Q16659 721 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 ELMSAN1Q6PJG2 1045 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 NOSTRINQ8IVI9 506 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 GLYCTKQ8IVS8 523 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 TMEM105Q8N8V8 129 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 RIN2Q8WYP3 895 aaPredicted RBP17.39■□□□□ 0.37
CLK3-211ENST00000563297 ZNF707Q96C28 371 aaPredicted RBP17.39■□□□□ 0.37
CLK3-211ENST00000563297 ZSCAN31Q96LW9 406 aaPredicted RBP17.39■□□□□ 0.37
CLK3-211ENST00000563297 KIF2CQ99661 725 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 CCDC113Q9H0I3 377 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 NT5C3AQ9H0P0 336 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 PLEKHA4Q9H4M7 779 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 FAM86C1Q9NVL1 165 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 TRIP11Q15643 1979 aa17.39■□□□□ 0.37
CLK3-211ENST00000563297 H0Y858 1186 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 GALR2O43603 387 aaPredicted RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 PRKCBP05771 671 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 RPL17P18621 184 aaKnown RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 TRAPPC10P48553 1259 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 FXR2P51116 673 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLK3-211ENST00000563297 HMGN5P82970 282 aaKnown RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 TUSC3Q13454 348 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 HSP90AA2PQ14568 343 aaPredicted RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 EEF1DP3Q658K8 133 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 ASTLQ6HA08 431 aaPredicted RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 DEPTORQ8TB45 409 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 SMG7Q92540 1137 aaKnown RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 ATOH1Q92858 354 aaPredicted RBP17.38■□□□□ 0.37
CLK3-211ENST00000563297 IGSF9Q9P2J2 1179 aa17.38■□□□□ 0.37
CLK3-211ENST00000563297 CASTOR2A6NHX0 329 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 RECQL4O94761 1208 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 THP07101 528 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 LIG1P18858 919 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 CCT6AP40227 531 aaKnown RBP17.37■□□□□ 0.37
CLK3-211ENST00000563297 CLCN5P51795 746 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 PDIA5Q14554 519 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 NBR1Q14596 966 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 PPP2R5AQ15172 486 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 NAB2Q15742 525 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 TMEM132AQ24JP5 1023 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 RTP2Q5QGT7 225 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 PRSS55Q6UWB4 352 aaPredicted RBP17.37■□□□□ 0.37
CLK3-211ENST00000563297 FAM184AQ8NB25 1140 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 BHMT2Q9H2M3 363 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 MFSD1Q9H3U5 465 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 DUSP12Q9UNI6 340 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 KIAA1024Q9UPX6 916 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 USP34Q70CQ2 3546 aa17.37■□□□□ 0.37
CLK3-211ENST00000563297 PTPRZ1P23471 2315 aaPredicted RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 U2AF2P26368 475 aaKnown RBP eCLIP17.36■□□□□ 0.373e-6■■□□□ 13
CLK3-211ENST00000563297 GBP2P32456 591 aaPredicted RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 TOB1P50616 345 aaPredicted RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 GNL2Q13823 731 aaKnown RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 NT5DC1Q5TFE4 455 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 FAM171A1Q5VUB5 890 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 HAUS3Q68CZ6 603 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 HASPINQ8TF76 798 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 RSAD2Q8WXG1 361 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 STAMQ92783 540 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 IFT74Q96LB3 600 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 MYADMQ96S97 322 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 CLSTN3Q9BQT9 956 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 ADPGKQ9BRR6 497 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 KIFC3Q9BVG8 833 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 PRKD2Q9BZL6 878 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 PIDD1Q9HB75 910 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 SH2B1Q9NRF2 756 aaPredicted RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 ZDHHC7Q9NXF8 308 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 LRWD1Q9UFC0 647 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 ZFHX2Q9C0A1 2572 aaPredicted RBP17.36■□□□□ 0.37
CLK3-211ENST00000563297 CLUHO75153 1309 aa17.36■□□□□ 0.37
CLK3-211ENST00000563297 SF3B1O75533 1304 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLK3-211ENST00000563297 NARSO43776 548 aaKnown RBP17.35■□□□□ 0.37
CLK3-211ENST00000563297 ZMYND10O75800 440 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 KIF4AO95239 1232 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 NPR3P17342 541 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 EFNA5P52803 228 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 CREMQ03060 361 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 PTGDRQ13258 359 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 CEP57Q86XR8 500 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 IGSF22Q8N9C0 903 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 FLCNQ8NFG4 579 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 LNX1Q8TBB1 728 aaPredicted RBP17.35■□□□□ 0.37
CLK3-211ENST00000563297 PIK3R5Q8WYR1 880 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 KIFAP3Q92845 792 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 TTPALQ9BTX7 342 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 DDX19AQ9NUU7 478 aaKnown RBP17.35■□□□□ 0.37
CLK3-211ENST00000563297 EPS15L1Q9UBC2 864 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 NOL7Q9UMY1 257 aaKnown RBP17.35■□□□□ 0.37
CLK3-211ENST00000563297 GDAQ9Y2T3 454 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms