RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 MROH7Q68CQ1 1323 aa15.13■□□□□ 0.01
CLK3-209ENST00000562670 LRRIQ3A6PVS8 624 aaPredicted RBP15.12■□□□□ 0.01
CLK3-209ENST00000562670 AKR1B15C9JRZ8 316 aaPredicted RBP15.12■□□□□ 0.01
CLK3-209ENST00000562670 IL18RAPO95256 599 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 SGPL1O95470 568 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CLTAP09496 248 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 TRIM21P19474 475 aaKnown RBP15.12■□□□□ 0.01
CLK3-209ENST00000562670 KCNMA1Q12791 1236 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 TMEM132AQ24JP5 1023 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CBWD6Q4V339 395 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CBWD3Q5JTY5 395 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CBWD5Q5RIA9 395 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 C1orf53Q5VUE5 145 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 KRT39Q6A163 491 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 SMYD5Q6GMV2 418 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 C15orf39Q6ZRI6 1047 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 TC2NQ8N9U0 490 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CAGE1Q8TC20 777 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 PANX2Q96RD6 677 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 CGRRF1Q99675 332 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 GCNT4Q9P109 453 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 NOD1Q9Y239 953 aa15.12■□□□□ 0.01
CLK3-209ENST00000562670 NRDCO43847 1150 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 B4GALT4O60513 344 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 CSDE1O75534 798 aaKnown RBP15.11■□□□□ 0.01
CLK3-209ENST00000562670 CHRNA1P02708 482 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 GRM5P41594 1212 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 ACOT2P49753 483 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 DLG4P78352 724 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 PPP3CAQ08209 521 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 EPC2Q52LR7 807 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 ZBTB41Q5SVQ8 909 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 DPY19L2P1Q6NXN4 242 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 FAM228AQ86W67 206 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 WDR49Q8IV35 697 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 LRRC8AQ8IWT6 810 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 FAM126BQ8IXS8 530 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 CCDC155Q8N6L0 562 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 NEK11Q8NG66 645 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 U2AF1L4Q8WU68 220 aaKnown RBP15.11■□□□□ 0.01
CLK3-209ENST00000562670 FNBP1Q96RU3 617 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 DNAJC7Q99615 494 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 GANQ9H2C0 597 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 CHST12Q9NRB3 414 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 TRMT13Q9NUP7 481 aaKnown RBP15.11■□□□□ 0.01
CLK3-209ENST00000562670 CEP72Q9P209 647 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 MYO6Q9UM54 1294 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 GINS2Q9Y248 185 aa15.11■□□□□ 0.01
CLK3-209ENST00000562670 TTC26A0AVF1 554 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 CD4P01730 458 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 PON1P27169 355 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 THPOP40225 353 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 KCNJ6P48051 423 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 GJA8P48165 433 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 MNX1P50219 401 aaPredicted RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 FXR1P51114 621 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLK3-209ENST00000562670 ZBED6P86452 979 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 ENOX2Q16206 610 aaKnown RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 PTPN21Q16825 1174 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 ZACNQ401N2 412 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 FBXO47Q5MNV8 452 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 TRIM65Q6PJ69 517 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 ZBTB33Q86T24 672 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 NT5DC4Q86YG4 428 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 CD302Q8IX05 232 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 CACTINQ8WUQ7 758 aaKnown RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 CPB2Q96IY4 423 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 TSPAN18Q96SJ8 248 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 TRAIPQ9BWF2 469 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 NAA15Q9BXJ9 866 aaKnown RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 TMEM117Q9H0C3 514 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 NUCKS1Q9H1E3 243 aaKnown RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 TMX1Q9H3N1 280 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 ASB7Q9H672 318 aa15.1■□□□□ 0.01
CLK3-209ENST00000562670 LUC7L2Q9Y383 392 aaKnown RBP15.1■□□□□ 0.01
CLK3-209ENST00000562670 PITPNM1O00562 1244 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 GPR182O15218 404 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 ZC3H11AO75152 810 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLK3-209ENST00000562670 RPS6KA5O75582 802 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 NOL4O94818 638 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 HARSP12081 509 aaKnown RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 COL6A1P12109 1028 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 HNRNPH3P31942 346 aaKnown RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 CASP14P31944 242 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 TNFSF9P41273 254 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 GCLMP48507 274 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 KLK7P49862 253 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 ANKRD33Q7Z3H0 272 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 FMNL3Q8IVF7 1028 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 ZNF397Q8NF99 534 aaPredicted RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 LMO3Q8TAP4 145 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 CCDC127Q96BQ5 260 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 PCMTD1Q96MG8 357 aaPredicted RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 LSM14BQ9BX40 385 aaKnown RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 KCNF1Q9H3M0 494 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 MMRN2Q9H8L6 949 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 RPF1Q9H9Y2 349 aaKnown RBP15.09■□□□□ 0.01
CLK3-209ENST00000562670 PLEKHA5Q9HAU0 1116 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 ERVK-5Q9HDB9 667 aa15.09■□□□□ 0.01
CLK3-209ENST00000562670 SIX2Q9NPC8 291 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms