RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CLSTN3Q9BQT9 956 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 PRMT7Q9NVM4 692 aaPredicted RBP18.22■□□□□ 0.51
CLN3-208ENST00000561505 FBXW11Q9UKB1 542 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 DCHS1Q96JQ0 3298 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 PTGESO14684 152 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 NPTXRO95502 500 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 CFHP08603 1231 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 HNRNPA1P09651 372 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-208ENST00000561505 SPATA31D3P0C874 917 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 HSP90AA2PQ14568 343 aaPredicted RBP18.21■□□□□ 0.51
CLN3-208ENST00000561505 ANKRD1Q15327 319 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 RTP2Q5QGT7 225 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 SPATA31D4Q6ZUB0 917 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 ERMP1Q7Z2K6 904 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 ADSSL1Q8N142 457 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 LNX1Q8TBB1 728 aaPredicted RBP18.21■□□□□ 0.51
CLN3-208ENST00000561505 PIGOQ8TEQ8 1089 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 RIN2Q8WYP3 895 aaPredicted RBP18.21■□□□□ 0.51
CLN3-208ENST00000561505 PAAF1Q9BRP4 392 aa18.21■□□□□ 0.51
CLN3-208ENST00000561505 TRIM6Q9C030 488 aaPredicted RBP18.21■□□□□ 0.51
CLN3-208ENST00000561505 POLR3FQ9H1D9 316 aaPredicted RBP18.21■□□□□ 0.51
CLN3-208ENST00000561505 SF3B1O75533 1304 aaKnown RBP eCLIP18.21■□□□□ 0.512e-9■■■■■ 80.4
CLN3-208ENST00000561505 BTBD18B2RXH4 712 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 DTNBO60941 627 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 STARD6P59095 220 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 RTL10Q7L3V2 364 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 CDR2LQ86X02 465 aaPredicted RBP18.2■□□□□ 0.5
CLN3-208ENST00000561505 GPR152Q8TDT2 470 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 DDX23Q9BUQ8 820 aaKnown RBP18.2■□□□□ 0.5
CLN3-208ENST00000561505 TBC1D17Q9HA65 648 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 BRMS1Q9HCU9 246 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 TUFT1Q9NNX1 390 aa18.2■□□□□ 0.5
CLN3-208ENST00000561505 EP300Q09472 2414 aaPredicted RBP18.2■□□□□ 0.5
CLN3-208ENST00000561505 TTLL13PA6NNM8 815 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 TADA2AO75478 443 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 ME3Q16798 604 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 CATSPER3Q86XQ3 398 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 NSUN7Q8NE18 718 aaKnown RBP18.19■□□□□ 0.5
CLN3-208ENST00000561505 MCPH1Q8NEM0 835 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 GTF3C6Q969F1 213 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 POLR3CQ9BUI4 534 aaPredicted RBP18.19■□□□□ 0.5
CLN3-208ENST00000561505 APOL6Q9BWW8 343 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 CCDC113Q9H0I3 377 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 PDZD7Q9H5P4 517 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 GPRC5CQ9NQ84 441 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 KLK14Q9P0G3 267 aa18.19■□□□□ 0.5
CLN3-208ENST00000561505 TMEM189-UBE2V1I3L0A0 370 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 NEMFO60524 1076 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 RPL17P18621 184 aaKnown RBP18.18■□□□□ 0.5
CLN3-208ENST00000561505 TXKP42681 527 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 RBM25P49756 843 aaKnown RBP18.18■□□□□ 0.5
CLN3-208ENST00000561505 UVSSAQ2YD98 709 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 PRSS55Q6UWB4 352 aaPredicted RBP18.18■□□□□ 0.5
CLN3-208ENST00000561505 DIS3L2Q8IYB7 885 aaKnown RBP18.18■□□□□ 0.5
CLN3-208ENST00000561505 TTPALQ9BTX7 342 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 TMEM60Q9H2L4 133 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 PIDD1Q9HB75 910 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 ARHGEF3Q9NR81 526 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 PARP2Q9UGN5 583 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 NUMBLQ9Y6R0 609 aa18.18■□□□□ 0.5
CLN3-208ENST00000561505 FANCMQ8IYD8 2048 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 POTEMA6NI47 508 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 ACKR2O00590 384 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 N4BP3O15049 544 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 USO1O60763 962 aaKnown RBP18.17■□□□□ 0.5
CLN3-208ENST00000561505 KIF4AO95239 1232 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 MYBP10242 640 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 MUTP22033 750 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 FSHRP23945 695 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 ELAVL2Q12926 359 aaKnown RBP18.17■□□□□ 0.5
CLN3-208ENST00000561505 RAB33AQ14088 237 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 PDXDC1Q6P996 788 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 RABGGTAQ92696 567 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 FGF14Q92915 247 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 NACC1Q96RE7 527 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 RPP25Q9BUL9 199 aaKnown RBP18.17■□□□□ 0.5
CLN3-208ENST00000561505 C2orf40Q9H1Z8 148 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 CXCL16Q9H2A7 254 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 CACNG4Q9UBN1 327 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 CDH7Q9ULB5 785 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 CA14Q9ULX7 337 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 SIT1Q9Y3P8 196 aa18.17■□□□□ 0.5
CLN3-208ENST00000561505 A0A087WWV3 80 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 LRRIQ4A6NIV6 560 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 MED24O75448 989 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 LARGE1O95461 756 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 LMNAP02545 664 aaKnown RBP18.16■□□□□ 0.5
CLN3-208ENST00000561505 EDN1P05305 212 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 THP07101 528 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 GLULP15104 373 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 CYP11B2P19099 503 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 FGFR3P22607 806 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 RPA1P27694 616 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 ORC2Q13416 577 aaPredicted RBP18.16■□□□□ 0.5
CLN3-208ENST00000561505 PSMD5Q16401 504 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 FAM171A1Q5VUB5 890 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 DCLRE1AQ6PJP8 1040 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 CD300LGQ6UXG3 332 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 GET4Q7L5D6 327 aaPredicted RBP18.16■□□□□ 0.5
CLN3-208ENST00000561505 NECAB1Q8N987 351 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms