RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ABCD1P33897 745 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 PPM1AP35813 382 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 RARRES1P49788 294 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ZNF165P49910 485 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 SMTNP53814 917 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 POLGP54098 1239 aaPredicted RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 NLRP11P59045 1033 aaKnown RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 TPD52L1Q16890 204 aaPredicted RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 KMT5BQ4FZB7 885 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ANO6Q4KMQ2 910 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ISM2Q6H9L7 571 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 RINT1Q6NUQ1 792 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 TMC7Q7Z402 723 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 KCNK18Q7Z418 384 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ECHDC2Q86YB7 292 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ABI1Q8IZP0 508 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 SLC39A11Q8N1S5 342 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 MYCT1Q8N699 235 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 LINC01465Q8N7H1 131 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 SPATA20Q8TB22 786 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 CASP10Q92851 521 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 ERCC4Q92889 916 aaPredicted RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 IFT74Q96LB3 600 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 MAP7D2Q96T17 732 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 NIFKQ9BYG3 293 aaKnown RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 POMKQ9H5K3 350 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 CYP26B1Q9NR63 512 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 SPG21Q9NZD8 308 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 LARSQ9P2J5 1176 aaKnown RBP12.94□□□□□ -0.34
LDLR-212ENST00000560467 SEL1LQ9UBV2 794 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 MAN1B1Q9UKM7 699 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 HCFC2Q9Y5Z7 792 aa12.94□□□□□ -0.34
LDLR-212ENST00000560467 A0A087WWV3 80 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 C2orf71A6NGG8 1288 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 H0Y858 1186 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 PSMA7O14818 248 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 ZNF862O60290 1169 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 CLASP2O75122 1294 aaKnown RBP12.93□□□□□ -0.34
LDLR-212ENST00000560467 RHOBTB3O94955 611 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 SCP2P22307 547 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 GUCY2CP25092 1073 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 KRT17Q04695 432 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 TBC1D8BQ0IIM8 1120 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 MORC3Q14149 939 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 SMC1AQ14683 1233 aaKnown RBP12.93□□□□□ -0.34
LDLR-212ENST00000560467 EFCAB12Q6NXP0 572 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 C12orf76Q8N812 135 aaPredicted RBP12.93□□□□□ -0.34
LDLR-212ENST00000560467 HELQQ8TDG4 1101 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 TCP11Q8WWU5 503 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 KIFAP3Q92845 792 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 RIPOR3Q96MK2 946 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 C17orf75Q9HAS0 396 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 PARVGQ9HBI0 331 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 CFAP54Q96N23 3096 aa12.93□□□□□ -0.34
LDLR-212ENST00000560467 RIF1Q5UIP0 2472 aaKnown RBP12.93□□□□□ -0.34
LDLR-212ENST00000560467 NT5C1B-RDH14C9J2C7 533 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MAGEB2O15479 319 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 GAS2O43903 313 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 USO1O60763 962 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 CSDE1O75534 798 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 FGFR1OPO95684 399 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 ASGR2P07307 311 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 ZSCAN20P17040 1043 aaPredicted RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 EIF4BP23588 611 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 TMOD1P28289 359 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 ERCC5P28715 1186 aaPredicted RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 CA8P35219 290 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 GPC3P51654 580 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 RAD51AP2Q09MP3 1159 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MTMR3Q13615 1198 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 GIT2Q14161 759 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 PPP2R5AQ15172 486 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 UGCGQ16739 394 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MTERF2Q49AM1 385 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 FNDC1Q4ZHG4 1894 aaPredicted RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 RARS2Q5T160 578 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 C1orf186Q6ZWK4 172 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 ANO5Q75V66 913 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 ZNF598Q86UK7 904 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 TMEM173Q86WV6 379 aaPredicted RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 KMT2EQ8IZD2 1858 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 TMEM105Q8N8V8 129 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MRPL43Q8N983 215 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 FEZF2Q8TBJ5 459 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 FAM200AQ8TCP9 573 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 AUTS2Q8WXX7 1259 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 SCLT1Q96NL6 688 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MTRQ99707 1265 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 DNAJC25Q9H1X3 360 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 ADAM7Q9H2U9 754 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 MRPL44Q9H9J2 332 aaKnown RBP12.92□□□□□ -0.34
LDLR-212ENST00000560467 SORCS3Q9UPU3 1222 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 NR2E1Q9Y466 385 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 PCDHB13Q9Y5F0 798 aa12.92□□□□□ -0.34
LDLR-212ENST00000560467 BICDL2A1A5D9 508 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 DARSP14868 501 aaKnown RBP12.91□□□□□ -0.34
LDLR-212ENST00000560467 CASP1P29466 404 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 DRP2Q13474 957 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 ALCAMQ13740 583 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms