RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 LRRC55Q6ZSA7 311 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 RTN4RL1Q86UN2 441 aaPredicted RBP10.48□□□□□ -0.73
CUX1-216ENST00000558469 CREBRFQ8IUR6 639 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 SLC9A9Q8IVB4 645 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 THNSL1Q8IYQ7 743 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 RPUSD2Q8IZ73 545 aaKnown RBP10.48□□□□□ -0.73
CUX1-216ENST00000558469 GPD1LQ8N335 351 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 RNF214Q8ND24 703 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FAM200AQ8TCP9 573 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 VWCEQ96DN2 955 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 CCDC51Q96ER9 411 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 CEP63Q96MT8 703 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FAM213AQ9BRX8 229 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FTHL17Q9BXU8 183 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FANCLQ9NW38 375 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FRMD4BQ9Y2L6 1034 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 NFE2L3Q9Y4A8 694 aa10.48□□□□□ -0.73
CUX1-216ENST00000558469 FNDC1Q4ZHG4 1894 aaPredicted RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 ENPP3O14638 875 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 EXTL3O43909 919 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 FAM189A1O60320 539 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 TNFSF9P41273 254 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 PPIGQ13427 754 aaKnown RBP eCLIP10.47□□□□□ -0.733e-7■■■□□ 15.9
CUX1-216ENST00000558469 IKBKEQ14164 716 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 MYBPC2Q14324 1141 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 NCAPHQ15003 741 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 SNRNP35Q16560 246 aaKnown RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 ZBTB41Q5SVQ8 909 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 CNKSR3Q6P9H4 555 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 CRELD2Q6UXH1 353 aaPredicted RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 FILIP1Q7Z7B0 1213 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 CBWD2Q8IUF1 395 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 ZC3H3Q8IXZ2 948 aaKnown RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 TMEM192Q8IY95 271 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 CEP120Q8N960 986 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 SMG8Q8ND04 991 aaKnown RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 TMEM174Q8WUU8 243 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 LINC01599Q8WXQ3 324 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 APOL6Q9BWW8 343 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 NXF3Q9H4D5 531 aaKnown RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 THAP9Q9H5L6 903 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 KIAA1586Q9HCI6 787 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 IL23AQ9NPF7 189 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 RGS18Q9NS28 235 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 SAMSN1Q9NSI8 373 aaKnown RBP10.47□□□□□ -0.73
CUX1-216ENST00000558469 FAM105AQ9NUU6 356 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 HES2Q9Y543 173 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 IPPQ9Y573 584 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 PCDHB2Q9Y5E7 798 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 NR2E3Q9Y5X4 410 aa10.47□□□□□ -0.73
CUX1-216ENST00000558469 TNRC18O15417 2968 aaPredicted RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 A0A0U1RQF3 1178 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 ZNF233A6NK53 670 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 GOLGA6L19H0YKK7 550 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 AKAP3O75969 853 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 PFKMP08237 780 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 STAG3L1P0CL83 205 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 EPB41P11171 864 aaKnown RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 SKIP12755 728 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 AKAP5P24588 427 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 PSMC2P35998 433 aaKnown RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 GRM5P41594 1212 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 RAB27AP51159 221 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 HSP90AA2PQ14568 343 aaPredicted RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 KYAT1Q16773 422 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 CCDC40Q4G0X9 1142 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 SLC24A5Q71RS6 500 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 IRF2BP1Q8IU81 584 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 FAM186BQ8IYM0 893 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 RNF169Q8NCN4 708 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 FBXL18Q96ME1 805 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 ACAP3Q96P50 834 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 LBHD1Q9BQE6 289 aaPredicted RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 CCDC94Q9BW85 323 aaPredicted RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 TRAIPQ9BWF2 469 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 RBSNQ9H1K0 784 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 SNTG2Q9NY99 539 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 PARP2Q9UGN5 583 aa10.46□□□□□ -0.73
CUX1-216ENST00000558469 CPSF3Q9UKF6 684 aaKnown RBP10.46□□□□□ -0.73
CUX1-216ENST00000558469 GBF1Q92538 1859 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 C9IYK1 514 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 SLC16A3O15427 465 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 GNA14O95837 355 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 FGBP02675 491 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 ADRB2P07550 413 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 CLTAP09496 248 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 ACTN1P12814 892 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 ITGA4P13612 1032 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 CDK11BP21127 795 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 YARSP54577 528 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 TPM4P67936 248 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 CYP24A1Q07973 514 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 ENOX2Q16206 610 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 CDKAL1Q5VV42 579 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 FAM43BQ6ZT52 329 aaPredicted RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 C16orf59Q7L2K0 433 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 OTOP2Q7RTS6 562 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 MRPL10Q7Z7H8 261 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 ECHDC2Q86YB7 292 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 FAM114A1Q8IWE2 563 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms