RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZSCAN5CA6NGD5 496 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 SRRM3A6NNA2 597 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 DPYSL4O14531 572 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ATP2A1O14983 1001 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 EIF3HO15372 352 aaKnown RBP eCLIP7.82□□□□□ -1.162e-9■■■■■ 41.7
VPS13C-206ENST00000558338 ZEB2O60315 1214 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 FTLP02792 175 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ABL2P42684 1182 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 NPTX2P47972 431 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 GUCY2FP51841 1108 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 DLG4P78352 724 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 MRPS25P82663 173 aaKnown RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 SPP2Q13103 211 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 BIRC3Q13489 604 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 BRDTQ58F21 947 aaPredicted RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 TTMPQ5BVD1 217 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 C1orf220Q5T0J3 134 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 PPP1R2P3Q6NXS1 205 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 GPD1LQ8N335 351 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 FBXL13Q8NEE6 735 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 EPS8L1Q8TE68 723 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 KCNN1Q92952 543 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ARHGEF26Q96DR7 871 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 TRIM11Q96F44 468 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 CEP170P1Q96L14 293 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ATP6V1G3Q96LB4 118 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 MFSD14AQ96MC6 490 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 FBXL18Q96ME1 805 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 AP1M1Q9BXS5 423 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 FAM129AQ9BZQ8 928 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 DDX47Q9H0S4 455 aaKnown RBP7.82□□□□□ -1.16
VPS13C-206ENST00000558338 GOLPH3Q9H4A6 298 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ATP6V0A4Q9HBG4 840 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 PARP2Q9UGN5 583 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF112Q9UJU3 913 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 GTF3C4Q9UKN8 822 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 PPP2R3BQ9Y5P8 575 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 WDR81Q562E7 1941 aa7.82□□□□□ -1.16
VPS13C-206ENST00000558338 COL11A1P12107 1806 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TPD52L2O43399 206 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PHF2O75151 1096 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CCNE2O96020 404 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ADRB2P07550 413 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 NR3C2P08235 984 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 FAM153BP0C7A2 387 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 MYZAPP0CAP1 466 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CNGA1P29973 690 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ECHS1P30084 290 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CHRNA3P32297 505 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 USP8P40818 1118 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 RFC5P40937 340 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CDR1P51861 262 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 EIF3BP55884 814 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 GNGT1P63211 74 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CYP24A1Q07973 514 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PRPF4BQ13523 1007 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 BAATQ14032 418 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 FAM153CQ494X1 144 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PLA2G4FQ68DD2 849 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SNRNP48Q6IEG0 339 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 MIS18BP1Q6P0N0 1132 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CROCCP2Q86T23 111 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SRLQ86TD4 932 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF677Q86XU0 584 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SPATS2Q86XZ4 545 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PPM1KQ8N3J5 372 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PARD3BQ8TEW8 1205 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 POMGNT1Q8WZA1 660 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 DHX38Q92620 1227 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ATG4CQ96DT6 458 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 HINFPQ9BQA5 517 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ZSWIM1Q9BR11 485 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TEX13BQ9BXU2 312 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ACAD9Q9H845 621 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 JPH1Q9HDC5 661 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TMOD4Q9NZQ9 345 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 GABBR1Q9UBS5 961 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 FAM153AQ9UHL3 310 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 HACL1Q9UJ83 578 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 NOCTQ9UK39 431 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 MTUS1Q9ULD2 1270 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PLAAQ9Y263 795 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF233A6NK53 670 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TISP43B9A030 160 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TULP2O00295 520 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PODXLO00592 558 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ATP9AO75110 1047 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CYP1A2P05177 515 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 MYBL1P10243 752 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 KCNA2P16389 499 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 NR1D1P20393 614 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CTNNA2P26232 953 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CTNNA1P35221 906 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 HSD17B3P37058 310 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 IRAK1P51617 712 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 DRG2P55039 364 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 BPIFB4P59827 614 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 DR1Q01658 176 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CDR2Q01850 454 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 GCNT1Q02742 428 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms