RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 DSC1Q08554 894 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 GRIK3Q13003 919 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 BMS1Q14692 1282 aaKnown RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 SKIV2LQ15477 1246 aaKnown RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 ZC2HC1CQ53FD0 456 aaPredicted RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 COLGALT2Q8IYK4 626 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 MICAL1Q8TDZ2 1067 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 HVCN1Q96D96 273 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 TMEM169Q96HH4 297 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 IGSF21Q96ID5 467 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 ZBTB45Q96K62 511 aaPredicted RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 ACAP3Q96P50 834 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 STRA6Q9BX79 667 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 TRIM9Q9C026 710 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 TLR9Q9NR96 1032 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 TOPORSQ9NS56 1045 aaPredicted RBP11.7□□□□□ -0.54
LINC00239-201ENST00000556973 SERTAD1Q9UHV2 236 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 HPSEQ9Y251 543 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 GDAQ9Y2T3 454 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 PCDHB13Q9Y5F0 798 aa11.7□□□□□ -0.54
LINC00239-201ENST00000556973 TRIP11Q15643 1979 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 NCK2O43639 380 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 SYKP43405 635 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 OR1G1P47890 313 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 SLC11A1P49279 550 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 ERVFC1P60507 584 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 ALCAMQ13740 583 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 NOLC1Q14978 699 aaKnown RBP eCLIP11.69□□□□□ -0.54
LINC00239-201ENST00000556973 KYAT1Q16773 422 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 TCEAL5Q5H9L2 206 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 SLFN12LQ6IEE8 588 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 ALKAL1Q6UXT8 129 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 DDX53Q86TM3 631 aaKnown RBP11.69□□□□□ -0.54
LINC00239-201ENST00000556973 MAP4K3Q8IVH8 894 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 PPP2R3CQ969Q6 453 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 COLEC11Q9BWP8 271 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 GDPD2Q9HCC8 539 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 NGRNQ9NPE2 291 aaKnown RBP11.69□□□□□ -0.54
LINC00239-201ENST00000556973 ANKFY1Q9P2R3 1169 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 COG5Q9UP83 839 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 EXOC7Q9UPT5 735 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 TRANK1O15050 2925 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 CITO14578 2027 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 COL6A3P12111 3177 aa11.69□□□□□ -0.54
LINC00239-201ENST00000556973 PVALEFA0A1B0GWK0 134 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 GOLGA6L4A6NEF3 574 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PTGESO14684 152 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 FSCN2O14926 492 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 HNRNPDLO14979 420 aaKnown RBP11.68□□□□□ -0.54
LINC00239-201ENST00000556973 ACTN4O43707 911 aaKnown RBP11.68□□□□□ -0.54
LINC00239-201ENST00000556973 B4GALT3O60512 393 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PPP1R37O75864 691 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 GCNT3O95395 438 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 IRS1P35568 1242 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 AFMP43652 599 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 NDUFA8P51970 172 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 OSTNP61366 133 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 ASIC1P78348 528 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 COASYQ13057 564 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 TUSC3Q13454 348 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 XKR4Q5GH76 650 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 L1TD1Q5T7N2 865 aaKnown RBP11.68□□□□□ -0.54
LINC00239-201ENST00000556973 STXBP4Q6ZWJ1 553 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 UNC13DQ70J99 1090 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 TMC7Q7Z402 723 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.68□□□□□ -0.54
LINC00239-201ENST00000556973 CEP120Q8N960 986 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 HLA-CQ95604 372 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PAGE5Q96GU1 130 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 ACCSQ96QU6 501 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 TCF25Q9BQ70 676 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 TMEM206Q9H813 350 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PLEKHA5Q9HAU0 1116 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 TBC1D7Q9P0N9 293 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 STYXL1Q9Y6J8 313 aa11.68□□□□□ -0.54
LINC00239-201ENST00000556973 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 A0A0B4J269 797 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 SMIM28A0A1B0GU29 152 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 FSD2A1L4K1 749 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 ANKRD63C9JTQ0 380 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 OGTO15294 1046 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 MYL1P05976 194 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 MYBP10242 640 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 HARSP12081 509 aaKnown RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 POSTNQ15063 836 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 NAB2Q15742 525 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 TMEM173Q86WV6 379 aaPredicted RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 VPS52Q8N1B4 723 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 MRPL43Q8N983 215 aaKnown RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 ATXN2LQ8WWM7 1075 aaKnown RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 HAPLN2Q9GZV7 340 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 CXCL16Q9H2A7 254 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 BLZF1Q9H2G9 400 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 ENTPD7Q9NQZ7 604 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 THEGQ9P2T0 379 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 EYSQ5T1H1 3165 aa11.67□□□□□ -0.54
LINC00239-201ENST00000556973 PDCD11Q14690 1871 aaKnown RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 PRRC2BQ5JSZ5 2229 aaKnown RBP11.67□□□□□ -0.54
LINC00239-201ENST00000556973 TADA2AO75478 443 aa11.66□□□□□ -0.54
LINC00239-201ENST00000556973 ZNF202O95125 648 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms