RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ZNF622Q969S3 477 aaKnown RBP eCLIP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF669Q96BR6 464 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC51Q96ER9 411 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 C8orf76Q96K31 380 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 DRC1Q96MC2 740 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TCEANC2Q96MN5 208 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PANX2Q96RD6 677 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TACO1Q9BSH4 297 aaKnown RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TRIM55Q9BYV6 548 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC8Q9H0W5 538 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 VIPAS39Q9H9C1 493 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 PDE11AQ9HCR9 933 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 HELLSQ9NRZ9 838 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MYO1AQ9UBC5 1043 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 DBF4Q9UBU7 674 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 LCMT1Q9UIC8 334 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 TUBE1Q9UJT0 475 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 L1RE1Q9UN81 338 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ANKRD26Q9UPS8 1709 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 HCFC2Q9Y5Z7 792 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 CLIC4Q9Y696 253 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 X6R8D5 127 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF142P52746 1687 aaPredicted RBP3.23□□□□□ -1.89
SLIRP-208ENST00000556956 SBNO1A3KN83 1393 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ADCY9O60503 1353 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 JCADQ9P266 1359 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 MED23Q9ULK4 1368 aa3.23□□□□□ -1.89
SLIRP-208ENST00000556956 ALKQ9UM73 1620 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 UTYO14607 1347 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ACEP12821 1306 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 IGSF1Q8N6C5 1336 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 UBR1Q8IWV7 1749 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SPATA31D1Q6ZQQ2 1576 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 LOC102724159A0A0B4J2E5 919 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 FAM237AA0A1B0GTK4 181 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SHTN1A0MZ66 631 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 H3BQF6 201 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 EBAG9O00559 213 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 KIF1CO43896 1103 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 DTNBO60941 627 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CDKL5O76039 1030 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 STK10O94804 968 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ERLIN2O94905 339 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CTDNEP1O95476 244 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ERBB2P04626 1255 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 PFKFB1P16118 471 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CALRP27797 417 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 PDIA3P30101 505 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 BCL6P41182 706 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 AARSP49588 968 aaKnown RBP eCLIP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 GYS2P54840 703 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 GFRA1P56159 465 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 GJA9P57773 515 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 EIF4A1P60842 406 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ZC3H6P61129 1189 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CCT2P78371 535 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 HTRA3P83110 453 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CASP8Q14790 479 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SLC39A14Q15043 492 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 PWP2Q15269 919 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 DDR2Q16832 855 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 INF2Q27J81 1249 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SPECC1LQ69YQ0 1117 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 TTLL5Q6EMB2 1281 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC70Q6NSX1 233 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CPLX2Q6PUV4 134 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 LRRC31Q6UY01 552 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 GBP6Q6ZN66 633 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 MICALCLQ6ZW33 695 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 B4GALNT4Q76KP1 1039 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 TADA2BQ86TJ2 420 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ZNF589Q86UQ0 364 aaPredicted RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ARHGEF25Q86VW2 580 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SPATS2Q86XZ4 545 aaKnown RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 TMEM139Q8IV31 216 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CARFQ8N187 725 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 LINC00482Q8N8I6 264 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 TRIML1Q8N9V2 468 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 KYQ8NBH2 561 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 RCBTB1Q8NDN9 531 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CNNM3Q8NE01 707 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CCDC148Q8NFR7 591 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 LINS1Q8NG48 757 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 PHOSPHO1Q8TCT1 267 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 DCAF4Q8WV16 495 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 ZBTB8AQ96BR9 441 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 DHX58Q96C10 678 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 EAF2Q96CJ1 260 aaPredicted RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CTAGE1Q96RT6 745 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CRAMP1Q96RY5 1269 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 WDR24Q96S15 920 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 NAPGQ99747 312 aaPredicted RBP3.22□□□□□ -1.89
SLIRP-208ENST00000556956 TINF2Q9BSI4 451 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 AGXT2Q9BYV1 514 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 SIL1Q9H173 461 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 EPB41L1Q9H4G0 881 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 GPR27Q9NS67 375 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 FANCLQ9NW38 375 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 CLDND1Q9NY35 253 aa3.22□□□□□ -1.89
SLIRP-208ENST00000556956 PUF60Q9UHX1 559 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms