RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 DDB1Q16531 1140 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 ATP13A4Q4VNC1 1196 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 GPR158Q5T848 1215 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 ABHD17BQ5VST6 288 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 CDYL2Q8N8U2 506 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 ZNF610Q8N9Z0 462 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 NELL1Q92832 810 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 ZNF496Q96IT1 587 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-216ENST00000555550 EMC7Q9NPA0 242 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 RNF181Q9P0P0 153 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 KCNG1Q9UIX4 513 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 TLK1Q9UKI8 766 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 MAPRE3Q9UPY8 281 aa5.4□□□□□ -1.54
SCFD1-216ENST00000555550 NOC2LQ9Y3T9 749 aaKnown RBP5.4□□□□□ -1.54
SCFD1-216ENST00000555550 USP15Q9Y4E8 981 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-216ENST00000555550 A0A087X0B3 334 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 KDM1AO60341 852 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 CLSTN1O94985 981 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 C1RP00736 705 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 IGLV2-14P01704 120 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 ITGAMP11215 1152 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 ITGB6P18564 788 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 PHC1P78364 1004 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 UBE3CQ15386 1083 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 TERF2Q15554 542 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 BROXQ5VW32 411 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 FRMD7Q6ZUT3 714 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 RNF169Q8NCN4 708 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 GAB3Q8WWW8 586 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 SLC5A5Q92911 643 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 ANO3Q9BYT9 981 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 MS4A5Q9H3V2 200 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 RNF7Q9UBF6 113 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 CLCA2Q9UQC9 943 aa5.39□□□□□ -1.55
SCFD1-216ENST00000555550 DIRC3C9JPN6 131 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 MATN4O95460 622 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 HLA-DOAP06340 250 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 MGAT5Q09328 741 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 STRN3Q13033 797 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 MPP3Q13368 585 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 ZBTB41Q5SVQ8 909 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 METRNLQ641Q3 311 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 SDE2Q6IQ49 451 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 EFCAB12Q6NXP0 572 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 GIMAP6Q6P9H5 292 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 DRICH1Q6PGQ1 229 aaPredicted RBP5.38□□□□□ -1.55
SCFD1-216ENST00000555550 DDX46Q7L014 1031 aaKnown RBP5.38□□□□□ -1.55
SCFD1-216ENST00000555550 CAGE1Q8TC20 777 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 ZNF384Q8TF68 577 aa5.38□□□□□ -1.55
SCFD1-216ENST00000555550 A0A1W2PR48 441 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 PRSS38A1L453 326 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 TBKBP1A7MCY6 615 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 NRP2O60462 931 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 SEC24DO94855 1032 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-216ENST00000555550 PFKMP08237 780 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 RBP3P10745 1247 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 HSD3B2P26439 372 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 PPARAQ07869 468 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 CT47A1Q5JQC4 288 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-216ENST00000555550 FAM102AQ5T9C2 384 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-216ENST00000555550 ARHGEF25Q86VW2 580 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 UBR7Q8N806 425 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 PHACTR3Q96KR7 559 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 TTC1Q99614 292 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 IFT22Q9H7X7 185 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 KIAA1586Q9HCI6 787 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 FPGT-TNNI3KV9GXZ4 949 aa5.37□□□□□ -1.55
SCFD1-216ENST00000555550 COL3A1P02461 1466 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-216ENST00000555550 SOX5P35711 763 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 NRG3P56975 720 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 DHCR24Q15392 516 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 LMBR1LQ6UX01 489 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 TFAP2CQ92754 450 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 CDC5LQ99459 802 aaKnown RBP5.36□□□□□ -1.55
SCFD1-216ENST00000555550 NEU1Q99519 415 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 DUSP26Q9BV47 211 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 PPP2R3BQ9Y5P8 575 aa5.36□□□□□ -1.55
SCFD1-216ENST00000555550 ULK1O75385 1050 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 SPATA31D3P0C874 917 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 ABCG1P45844 678 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 MANFP55145 182 aaKnown RBP5.35□□□□□ -1.55
SCFD1-216ENST00000555550 FOXF2Q12947 444 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 SPATA31D4Q6ZUB0 917 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 RNF180Q86T96 592 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 RASSF3Q86WH2 238 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 THNSL2Q86YJ6 484 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 MDM1Q8TC05 714 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 CHAC2Q8WUX2 184 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 Q96MF0 132 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 CAAP1Q9H8G2 361 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 NUMBLQ9Y6R0 609 aa5.35□□□□□ -1.55
SCFD1-216ENST00000555550 MAST3O60307 1309 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.34□□□□□ -1.55
SCFD1-216ENST00000555550 LRRC3CA6NJW4 275 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 NEMP1O14524 444 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 MGST3O14880 152 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 ZEB2O60315 1214 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 RBMXL2O75526 392 aaKnown RBP5.34□□□□□ -1.55
SCFD1-216ENST00000555550 BPIP17213 487 aa5.34□□□□□ -1.55
SCFD1-216ENST00000555550 MGAT1P26572 445 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms