RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SPATA31D3P0C874 917 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 MCM7P33993 719 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 PKP1Q13835 747 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 FUT10Q6P4F1 479 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 SLC27A1Q6PCB7 646 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 POTEGQ6S5H5 508 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 PPP4R3CPQ6ZMV5 832 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 SPATA31D4Q6ZUB0 917 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 CATSPER3Q86XQ3 398 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 PLCD3Q8N3E9 789 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 ANP32EQ9BTT0 268 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 USP20Q9Y2K6 914 aa11.7□□□□□ -0.54
SHMT2-215ENST00000554656 CLUHO75153 1309 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 CCDC195A0A1B0GUA6 201 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 SPDYE4A6NLX3 237 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 PTGESO14684 152 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 NARSO43776 548 aaKnown RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 XRCC6P12956 609 aaKnown RBP eCLIP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 NPR3P17342 541 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 RPL17P18621 184 aaKnown RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 ATP2B1P20020 1258 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 GRIK3Q13003 919 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 FAM187BQ17R55 369 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 ASTLQ6HA08 431 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 LILRA6Q6PI73 481 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 OTOP3Q7RTS5 596 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 GLYCTKQ8IVS8 523 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 RSAD2Q8WXG1 361 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 CCDC43Q96MW1 224 aaKnown RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 MYADMQ96S97 322 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 RHOBTB2Q9BYZ6 727 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 TRIM6Q9C030 488 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 CCDC113Q9H0I3 377 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 FZD8Q9H461 694 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 ZSCAN16Q9H4T2 348 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 PDZD7Q9H5P4 517 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 KCNK12Q9HB15 430 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 WDR6Q9NNW5 1121 aaKnown RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 TUFT1Q9NNX1 390 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 ADAM28Q9UKQ2 775 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 DUSP12Q9UNI6 340 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 RIF1Q5UIP0 2472 aaKnown RBP11.69□□□□□ -0.54
SHMT2-215ENST00000554656 FAM186AA6NE01 2351 aa11.69□□□□□ -0.54
SHMT2-215ENST00000554656 COL4A3Q01955 1670 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 SPTBN4Q9H254 2564 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 TGM5O43548 720 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 IGFBP6P24592 240 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 TDGQ13569 410 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 TRIM29Q14134 588 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 NAB2Q15742 525 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 ECM1Q16610 540 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 RTP2Q5QGT7 225 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 EEF1DP3Q658K8 133 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 PRSS55Q6UWB4 352 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 PALB2Q86YC2 1186 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 MCPH1Q8NEM0 835 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 HASPINQ8TF76 798 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 RIN2Q8WYP3 895 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 SMG7Q92540 1137 aaKnown RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 ATOH1Q92858 354 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 ACSF2Q96CM8 615 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 POLR3CQ9BUI4 534 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 COLEC11Q9BWP8 271 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 POLD4Q9HCU8 107 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 PARP2Q9UGN5 583 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 DMDP11532 3685 aa11.68□□□□□ -0.54
SHMT2-215ENST00000554656 PDCD11Q14690 1871 aaKnown RBP11.68□□□□□ -0.54
SHMT2-215ENST00000554656 CITO14578 2027 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 VPS37CA5D8V6 355 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-215ENST00000554656 CASTOR2A6NHX0 329 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 H3BQV1 296 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 PI15O43692 258 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 GFRA3O60609 400 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 RECQL4O94761 1208 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 KIF4AO95239 1232 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 PRKCBP05771 671 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 OR52Z1P0C646 297 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 CYP11B2P19099 503 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 RPA1P27694 616 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 NUBP1P53384 320 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 NCBP1Q09161 790 aaKnown RBP11.67□□□□□ -0.54
SHMT2-215ENST00000554656 HSP90AA2PQ14568 343 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-215ENST00000554656 NBR1Q14596 966 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 ZNF174Q15697 407 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 SKOR2Q2VWA4 1001 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-215ENST00000554656 USP41Q3LFD5 358 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 HACE1Q8IYU2 909 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 C4orf32Q8N8J7 132 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 KIFC3Q9BVG8 833 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 NT5C3AQ9H0P0 336 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 PRMT7Q9NVM4 692 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-215ENST00000554656 SNTG2Q9NY99 539 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 FNIP2Q9P278 1114 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 SSX2IPQ9Y2D8 614 aa11.67□□□□□ -0.54
SHMT2-215ENST00000554656 KRBA1A5PL33 1030 aa11.66□□□□□ -0.54
SHMT2-215ENST00000554656 PROB1E7EW31 1015 aa11.66□□□□□ -0.54
SHMT2-215ENST00000554656 N4BP3O15049 544 aa11.66□□□□□ -0.54
SHMT2-215ENST00000554656 ADAM12O43184 909 aa11.66□□□□□ -0.54
SHMT2-215ENST00000554656 CLCN5P51795 746 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms