RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 TYW1Q9NV66 732 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 SRRDQ9UH36 339 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 TRHDEQ9UKU6 1024 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 NOP58Q9Y2X3 529 aaKnown RBP4.48□□□□□ -1.69
VRK1-202ENST00000553683 ATRNL1Q5VV63 1379 aa4.48□□□□□ -1.69
VRK1-202ENST00000553683 WASHC2CQ9Y4E1 1318 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 GABRDO14764 452 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ADCY6O43306 1168 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 SGTAO43765 313 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ADSLP30566 484 aaPredicted RBP4.47□□□□□ -1.69
VRK1-202ENST00000553683 SLC16A1P53985 500 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 PER3P56645 1201 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ITKQ08881 620 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ARMC6Q6NXE6 501 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 PGM2L1Q6PCE3 622 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 DRC7Q8IY82 874 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 PQLC1Q8N2U9 271 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 MDM1Q8TC05 714 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ZNF483Q8TF39 744 aaPredicted RBP4.47□□□□□ -1.69
VRK1-202ENST00000553683 SLC25A43Q8WUT9 341 aaPredicted RBP4.47□□□□□ -1.69
VRK1-202ENST00000553683 FUBP3Q96I24 572 aaKnown RBP eCLIP4.47□□□□□ -1.69
VRK1-202ENST00000553683 TMEM140Q9NV12 185 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 FZD1Q9UP38 647 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 PCDHGA2Q9Y5H1 932 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ZMYM3Q14202 1370 aa4.47□□□□□ -1.69
VRK1-202ENST00000553683 ANKRD62A6NC57 917 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 NPIPB8E9PQR5 432 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 FZD9O00144 591 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 ZNF202O95125 648 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 OSMP13725 252 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 NCLP19338 710 aaKnown RBP4.46□□□□□ -1.7
VRK1-202ENST00000553683 HK1P19367 917 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 PTPN7P35236 360 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 SLC25A3Q00325 362 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 NOMO1Q15155 1222 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 MFSD14BQ5SR56 506 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 SEM1Q6ZVN7 128 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 RHOUQ7L0Q8 258 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 JADE3Q92613 823 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 TFAP2CQ92754 450 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 HAS1Q92839 578 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 CEP95Q96GE4 821 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 UHRF1Q96T88 793 aaPredicted RBP4.46□□□□□ -1.7
VRK1-202ENST00000553683 PRRX2Q99811 253 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 C7orf25Q9BPX7 421 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 HOMER2Q9NSB8 354 aa4.46□□□□□ -1.7
VRK1-202ENST00000553683 CXorf49A8MYA2 514 aaPredicted RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 NDUFS2O75306 463 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 RPLP2P05387 115 aaKnown RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 SPATA31D3P0C874 917 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 ZSCAN20P17040 1043 aaPredicted RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 BMPR1AP36894 532 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 IARSP41252 1262 aaKnown RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 ADKP55263 362 aaKnown RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 CCT2P78371 535 aaKnown RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 SEPT2Q15019 361 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 ATP2B3Q16720 1220 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 ATXN7L2Q5T6C5 722 aaPredicted RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 FNDC7Q5VTL7 733 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 PPP4R3AQ6IN85 833 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 SPATA31D4Q6ZUB0 917 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 PLXDC1Q8IUK5 500 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 ULK2Q8IYT8 1036 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 ZNF276Q8N554 614 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 OR10H5Q8NGA6 315 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 HDAC10Q969S8 669 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 MYEOVQ96EZ4 313 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 SORCS2Q96PQ0 1159 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 SENP6Q9GZR1 1112 aaPredicted RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 EIF2B4Q9UI10 523 aaKnown RBP4.45□□□□□ -1.7
VRK1-202ENST00000553683 SIK3Q9Y2K2 1263 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 CHST2Q9Y4C5 530 aa4.45□□□□□ -1.7
VRK1-202ENST00000553683 RNASET2O00584 256 aaKnown RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 AKAP8O43823 692 aaKnown RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 ITGB1P05556 798 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 HLA-DOAP06340 250 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 MYBL2P10244 700 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 ALAS1P13196 640 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 SLC6A9P48067 706 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 ATP8B2P98198 1209 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 EXOSC10Q01780 885 aaKnown RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 TAP1Q03518 808 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 CLUL1Q15846 466 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 CSRP2Q16527 193 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 DACT2Q5SW24 774 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 FAM102AQ5T9C2 384 aaPredicted RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 ANKS6Q68DC2 871 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 MIGA2Q7L4E1 593 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 GDF7Q7Z4P5 450 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 XYLT1Q86Y38 959 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 FAM177A1Q8N128 213 aaPredicted RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 SYNE4Q8N205 404 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 SLC16A11Q8NCK7 471 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 MTMR8Q96EF0 704 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 FAM193BQ96PV7 902 aaPredicted RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 ASPSCR1Q9BZE9 553 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 REXO4Q9GZR2 422 aaKnown RBP4.44□□□□□ -1.7
VRK1-202ENST00000553683 PCED1AQ9H1Q7 454 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 SPON1Q9HCB6 807 aa4.44□□□□□ -1.7
VRK1-202ENST00000553683 DMRT3Q9NQL9 472 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms