RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	GIT1	Q9Y2X7	761 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	WDR81	Q562E7	1941 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.34	□□□□□ -0.27	4e-7	■■■■■ 133.7
PTCH1-222	ENST00000551425	DDX11L8	A8MPP1	907 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	EDIL3	O43854	480 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	PSMD10	O75832	226 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	AXL	P30530	894 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	PFKFB3	Q16875	520 aa	Predicted RBP	13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	B3GNT9	Q6UX72	402 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	RTL10	Q7L3V2	364 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	MIER3	Q7Z3K6	550 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	GSTCD	Q8NEC7	633 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	LNX1	Q8TBB1	728 aa	Predicted RBP	13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	SLC7A14	Q8TBB6	771 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	PRPF31	Q8WWY3	499 aa	Known RBP	13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	ING5	Q8WYH8	240 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	TTPAL	Q9BTX7	342 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	LMAN1L	Q9HAT1	526 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	HCFC1R1	Q9NWW0	138 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	MRPS23	Q9Y3D9	190 aa	Known RBP	13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	HES2	Q9Y543	173 aa		13.33	□□□□□ -0.28
PTCH1-222	ENST00000551425	DOCK6	Q96HP0	2047 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	CHURC1-FNTB	B4DL54	471 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	TADA2A	O75478	443 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	PAPSS2	O95340	614 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	SRGAP2C	P0DJJ0	459 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	FNTB	P49356	437 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	USP11	P51784	963 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	SATB1	Q01826	763 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	LAMTOR4	Q0VGL1	99 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	AASDH	Q4L235	1098 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	TANGO2	Q6ICL3	276 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	NOTUM	Q6P988	496 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	UNQ6494/PRO21346	Q6UXR6	183 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	LONP2	Q86WA8	852 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	EXOC8	Q8IYI6	725 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	FAM160A2	Q8N612	972 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	PSPC1	Q8WXF1	523 aa	Known RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	SLC7A3	Q8WY07	619 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	FAM3C	Q92520	227 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	MCRS1	Q96EZ8	462 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	CCDC136	Q96JN2	1154 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	TRPV5	Q9NQA5	729 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	AVEN	Q9NQS1	362 aa	Predicted RBP	13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	ASPM	Q8IZT6	3477 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	ZMYM2	Q9UBW7	1377 aa		13.32	□□□□□ -0.28
PTCH1-222	ENST00000551425	C1QTNF9B	B2RNN3	333 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	SLC27A2	O14975	620 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	ZBTB43	O43298	467 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	TSPAN1	O60635	241 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	ERLIN2	O94905	339 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	C1QTNF9	P0C862	333 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	CHRNB1	P11230	501 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	FCAR	P24071	287 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	GNA11	P29992	359 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	PSMC5	P62195	406 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	GRIK3	Q13003	919 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	SRSF5	Q13243	272 aa	Known RBP	13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	RAB33A	Q14088	237 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	GAS6	Q14393	721 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	PSMD5	Q16401	504 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	PLA2G4F	Q68DD2	849 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	PDXDC1	Q6P996	788 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	POTEH	Q6S545	545 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	HACE1	Q8IYU2	909 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	SPEM1	Q8N4L4	309 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	RABGGTA	Q92696	567 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	GJA10	Q969M2	543 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	CSRNP2	Q9H175	543 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	DHX33	Q9H6R0	707 aa	Known RBP	13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	BRD9	Q9H8M2	597 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	BRPF3	Q9ULD4	1205 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	PPME1	Q9Y570	386 aa		13.31	□□□□□ -0.28
PTCH1-222	ENST00000551425	SOBP	A7XYQ1	873 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425		K7ESF4	209 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	ASAP2	O43150	1006 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	ADAM12	O43184	909 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	KCNK5	O95279	499 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	RHO	P08100	348 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	ZNF806	P0C7X5	589 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	HOXA6	P31267	233 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	NCBP1	Q09161	790 aa	Known RBP	13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	SF3A2	Q15428	464 aa	Known RBP	13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	SLC5A9	Q2M3M2	681 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	STPG1	Q5TH74	334 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	FAM171A1	Q5VUB5	890 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	MAP4K3	Q8IVH8	894 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	C12orf50	Q8NA57	414 aa	Predicted RBP	13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	RNF149	Q8NC42	400 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	BICD2	Q8TD16	824 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	IRF7	Q92985	503 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	TMEM143	Q96AN5	459 aa		13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	TRMT61B	Q9BVS5	477 aa	Known RBP	13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	LSM14B	Q9BX40	385 aa	Known RBP	13.3	□□□□□ -0.28
PTCH1-222	ENST00000551425	F5	P12259	2224 aa		13.29	□□□□□ -0.28
PTCH1-222	ENST00000551425	NOTCH4	Q99466	2003 aa		13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms