RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 DOCK8Q8NF50 2099 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 MED19A0JLT2 244 aaPredicted RBP17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 SPTLC2O15270 562 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 GIT2Q14161 759 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 BMS1Q14692 1282 aaKnown RBP17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 C1orf186Q6ZWK4 172 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 DDX53Q86TM3 631 aaKnown RBP17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 BCL7CQ8WUZ0 217 aaPredicted RBP17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 KIFAP3Q92845 792 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 IGSF21Q96ID5 467 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 CLIC6Q96NY7 704 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 PLIN2Q99541 437 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 TRAIPQ9BWF2 469 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 VN1R3Q9BXE9 311 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 ZDHHC9Q9Y397 364 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 FANCMQ8IYD8 2048 aa17.35■□□□□ 0.37
CHMP1A-206ENST00000549139 AXLP30530 894 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 CA8P35219 290 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 SLC12A3P55017 1021 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 KARSQ15046 597 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 PPP2R5AQ15172 486 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 SPECC1Q5M775 1068 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 OTOP3Q7RTS5 596 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 ACSF2Q96CM8 615 aaPredicted RBP17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 EPSTI1Q96J88 318 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 TIPINQ9BVW5 301 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 KCND2Q9NZV8 630 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 CCDC39Q9UFE4 941 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 CFAP45Q9UL16 551 aa17.34■□□□□ 0.37
CHMP1A-206ENST00000549139 PLA2G4BP0C869 781 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 GUCY2CP25092 1073 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 NAMPTP43490 491 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 PTPN14Q15678 1187 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 CCDC149Q6ZUS6 474 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 USP49Q70CQ1 688 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 SIX5Q8N196 739 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 RSPH1Q8WYR4 309 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 IFT74Q96LB3 600 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 SEMA4AQ9H3S1 761 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 NRDE2Q9H7Z3 1164 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 SFXN1Q9H9B4 322 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 BLOC1S4Q9NUP1 217 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 AGPAT5Q9NUQ2 364 aa17.33■□□□□ 0.36
CHMP1A-206ENST00000549139 LRRIQ4A6NIV6 560 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 INO80B-WBP1J3KQ70 363 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 ZC3H11AO75152 810 aaKnown RBP eCLIP17.32■□□□□ 0.362e-6■■■■■ 37.4
CHMP1A-206ENST00000549139 ERLIN2O94905 339 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 LMNAP02545 664 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 GALTP07902 379 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 SKIP12755 728 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 PLCG1P19174 1290 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 HOXA11P31270 313 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 DDIT3P35638 169 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 TXLNAP40222 546 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 MBTD1Q05BQ5 628 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 NCBP1Q09161 790 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 FOXD4L6Q3SYB3 417 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 CDCA2Q69YH5 1023 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 FOXD4L3Q6VB84 417 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 PPFIBP1Q86W92 1011 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 ZBTB8OSQ8IWT0 167 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 RASSF8Q8NHQ8 419 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 BSNDQ8WZ55 320 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 DRC1Q96MC2 740 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 RUSC1Q9BVN2 902 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 C2orf40Q9H1Z8 148 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 C17orf75Q9HAS0 396 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 POLD4Q9HCU8 107 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 IGSF9Q9P2J2 1179 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 DAXXQ9UER7 740 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 KCNG1Q9UIX4 513 aa17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 PIN4Q9Y237 131 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-206ENST00000549139 KRBA1A5PL33 1030 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 CARNS1A5YM72 827 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 NARSO43776 548 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 B4GALT3O60512 393 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 CUTAO60888 179 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 LILRB3O75022 631 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 N4BP1O75113 896 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 ZNF623O75123 536 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 HIP1RO75146 1068 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 SSBP05455 408 aaKnown RBP eCLIP17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 CLCN4P51793 760 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 DNM1Q05193 864 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 FAM187BQ17R55 369 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 TWF2Q6IBS0 349 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 TMEM87AQ8NBN3 555 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 KCNG4Q8TDN1 519 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 LRRC15Q8TF66 581 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 RAD54LQ92698 747 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 KLHL5Q96PQ7 755 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 FZD8Q9H461 694 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 TBC1D13Q9NVG8 400 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 WNT16Q9UBV4 365 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 RCOR1Q9UKL0 485 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 FBXL21Q9UKT6 434 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 ATP6V1DQ9Y5K8 247 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 CHD8Q9HCK8 2581 aa17.31■□□□□ 0.36
CHMP1A-206ENST00000549139 MEIS3P2A8K0S8 358 aa17.3■□□□□ 0.36
CHMP1A-206ENST00000549139 TSPAN1O60635 241 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms