RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 USO1O60763 962 aaKnown RBP9.39□□□□□ -0.91
USP28-215ENST00000545608 MED24O75448 989 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 NPTXRO95502 500 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 URODP06132 367 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 MYBP10242 640 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 XRCC6P12956 609 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP28-215ENST00000545608 AKAP5P24588 427 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 MCM7P33993 719 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 NCBP1Q09161 790 aaKnown RBP9.39□□□□□ -0.91
USP28-215ENST00000545608 MTMR3Q13615 1198 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 TRIM29Q14134 588 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 TMEM259Q4ZIN3 620 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 KIAA0319Q5VV43 1072 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 NUDT18Q6ZVK8 323 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 CATSPER3Q86XQ3 398 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 UBALD2Q8IYN6 164 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 TDRD5Q8NAT2 981 aaKnown RBP9.39□□□□□ -0.91
USP28-215ENST00000545608 GSTCDQ8NEC7 633 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 RABGGTAQ92696 567 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 RPS6KC1Q96S38 1066 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 PRRX2Q99811 253 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 ANP32EQ9BTT0 268 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 NFKBIZQ9BYH8 718 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 POLR3FQ9H1D9 316 aaPredicted RBP9.39□□□□□ -0.91
USP28-215ENST00000545608 NXF3Q9H4D5 531 aaKnown RBP9.39□□□□□ -0.91
USP28-215ENST00000545608 SFXN1Q9H9B4 322 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 RXFP1Q9HBX9 757 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 KLK14Q9P0G3 267 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 STK39Q9UEW8 545 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 GIT1Q9Y2X7 761 aa9.39□□□□□ -0.91
USP28-215ENST00000545608 A0A1B0GUA9 196 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 CD46P15529 392 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 DSG1Q02413 1049 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 ZNF174Q15697 407 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 CCDC149Q6ZUS6 474 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 SPIRE2Q8WWL2 714 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 TATDN2Q93075 761 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 B3GALT6Q96L58 329 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 CCDC43Q96MW1 224 aaKnown RBP9.38□□□□□ -0.91
USP28-215ENST00000545608 COLEC11Q9BWP8 271 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 GPR62Q9BZJ7 368 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 TRIM6Q9C030 488 aaPredicted RBP9.38□□□□□ -0.91
USP28-215ENST00000545608 MAN1C1Q9NR34 630 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 CHST7Q9NS84 486 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 FAM86C1Q9NVL1 165 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 CACNG4Q9UBN1 327 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 PARP2Q9UGN5 583 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 SSX2IPQ9Y2D8 614 aa9.38□□□□□ -0.91
USP28-215ENST00000545608 MYO10Q9HD67 2058 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 CCDC195A0A1B0GUA6 201 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 LRRIQ4A6NIV6 560 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 RFPL2O75678 378 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 GLUD1P00367 558 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 ADH1AP07327 375 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 SPATA31D3P0C874 917 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 GLUD2P49448 558 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 TUSC1Q2TAM9 212 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 FUT10Q6P4F1 479 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 SLC27A1Q6PCB7 646 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 C15orf39Q6ZRI6 1047 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 SPATA31D4Q6ZUB0 917 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 OTOP3Q7RTS5 596 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 PALB2Q86YC2 1186 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 CCDC83Q8IWF9 413 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 HACE1Q8IYU2 909 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 TMEM105Q8N8V8 129 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 CMASQ8NFW8 434 aaPredicted RBP9.37□□□□□ -0.91
USP28-215ENST00000545608 BSNDQ8WZ55 320 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 ACSF2Q96CM8 615 aaPredicted RBP9.37□□□□□ -0.91
USP28-215ENST00000545608 NACC1Q96RE7 527 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 PAAF1Q9BRP4 392 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 POLR3CQ9BUI4 534 aaPredicted RBP9.37□□□□□ -0.91
USP28-215ENST00000545608 CXCL16Q9H2A7 254 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 FZD8Q9H461 694 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 POLD4Q9HCU8 107 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 TUFT1Q9NNX1 390 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 USP20Q9Y2K6 914 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 C5orf42Q9H799 3197 aa9.37□□□□□ -0.91
USP28-215ENST00000545608 H0Y858 1186 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 N4BP1O75113 896 aaKnown RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 NR1I2O75469 434 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 EDN1P05305 212 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 RPL17P18621 184 aaKnown RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 CYP11B2P19099 503 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 RPA1P27694 616 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 GRIK3Q13003 919 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP28-215ENST00000545608 ECM1Q16610 540 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 FAM187BQ17R55 369 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 CDCA2Q69YH5 1023 aaPredicted RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 LILRA6Q6PI73 481 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 POTEGQ6S5H5 508 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 GLYCTKQ8IVS8 523 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 MCPH1Q8NEM0 835 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 RIN2Q8WYP3 895 aaPredicted RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 ATOH1Q92858 354 aaPredicted RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 ZNF707Q96C28 371 aaPredicted RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 C8orf76Q96K31 380 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 KCNK12Q9HB15 430 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 WDR6Q9NNW5 1121 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms