RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ARL2BPQ9Y2Y0 163 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 COMMD3-BMI1R4GMX3 469 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 GOLGA8AA7E2F4 631 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ZNF263O14978 683 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 RANBP6O60518 1105 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 SKAP2O75563 359 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 ECEL1O95672 775 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 RPN1P04843 607 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 SSBP05455 408 aaKnown RBP eCLIP5.64□□□□□ -1.51
USP28-213ENST00000544967 LONP1P36776 959 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 SULT2A1Q06520 285 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ADAM9Q13443 819 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 SHROOM1Q2M3G4 852 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 RRP12Q5JTH9 1297 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 FKBP15Q5T1M5 1219 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ACBD5Q5T8D3 534 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 TTI2Q6NXR4 508 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PDXDC1Q6P996 788 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 WDR75Q8IWA0 830 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 ABRAQ8N0Z2 381 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ENAHQ8N8S7 591 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 RBBP8NLQ8NC74 664 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 SLC44A5Q8NCS7 719 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 GIMAP8Q8ND71 665 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 TBC1D5Q92609 795 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 NELL1Q92832 810 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PPP2R3CQ969Q6 453 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 GFM2Q969S9 779 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 IQCGQ9H095 443 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 LRWD1Q9UFC0 647 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 TBC1D30Q9Y2I9 924 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 C2CD2Q9Y426 696 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PALM3A6NDB9 673 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 USP17L10C9JJH3 530 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 EVI5O60447 810 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 FOSP01100 380 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 GH2P01242 217 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 CLTAP09496 248 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PEX5P50542 639 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 NPEPPSP55786 919 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 FUT2Q10981 343 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 GRM4Q14833 912 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PPP1R15BQ5SWA1 713 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 NFRKBQ6P4R8 1299 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 CYB5R4Q7L1T6 521 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 TAOK1Q7L7X3 1001 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ANKRD13BQ86YJ7 626 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 UHMK1Q8TAS1 419 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 ESR2Q92731 530 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ERP27Q96DN0 273 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 CEP95Q96GE4 821 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ZSCAN10Q96SZ4 725 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 ECT2Q9H8V3 914 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 RMI1Q9H9A7 625 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PICK1Q9NRD5 415 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 RNF186Q9NXI6 227 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 DDX25Q9UHL0 483 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 SCOCQ9UIL1 159 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 MYH7BA7E2Y1 1941 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 A0A0A6YYK5 440 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 MAGEA13PA6NCF6 341 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 FAM187AA6NFU0 413 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 BIRC5O15392 142 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 HSPA8P11142 646 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 PYGBP11216 843 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 VCAM1P19320 739 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 TRIM21P19474 475 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 CCNE1P24864 410 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ATP5DP30049 168 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ZNF157P51786 506 aaPredicted RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 RAB15P59190 212 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 SLC7A5Q01650 507 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 TROAPQ12815 778 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 AMHR2Q16671 573 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PRAMEF18Q5VWM3 479 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 PHC3Q8NDX5 983 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 KLHL29Q96CT2 875 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 SLC10A4Q96EP9 437 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 RABEP2Q9H5N1 569 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ELP3Q9H9T3 547 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 DDX43Q9NXZ2 648 aaKnown RBP5.64□□□□□ -1.51
USP28-213ENST00000544967 ZSWIM5Q9P217 1185 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 TMCC3Q9ULS5 477 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 DAAM1Q9Y4D1 1078 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 ALPK3Q96L96 1907 aa5.64□□□□□ -1.51
USP28-213ENST00000544967 LTBP2Q14767 1821 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 RAD51CO43502 376 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 TLR2O60603 784 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 UNC5CO95185 931 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 MMEP08473 750 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 HOXC6P09630 235 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 EEF2P13639 858 aaKnown RBP5.63□□□□□ -1.51
USP28-213ENST00000544967 DESP17661 470 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 CDC25AP30304 524 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 MAGEA1P43355 309 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 RASSF2P50749 326 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 PRMT2P55345 433 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 MAGOHP61326 146 aaKnown RBP5.63□□□□□ -1.51
USP28-213ENST00000544967 ERVK-9P63128 1117 aa5.63□□□□□ -1.51
USP28-213ENST00000544967 ADRM1Q16186 407 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms