RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 TRIM74Q86UV6 250 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 TRIM73Q86UV7 250 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 MSL3Q8N5Y2 521 aaKnown RBP10.42□□□□□ -0.74
CLIP1-212ENST00000540304 ATP8B4Q8TF62 1192 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 SCFD2Q8WU76 684 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 BRI3BPQ8WY22 251 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 RPGRIP1Q96KN7 1286 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 FAM213AQ9BRX8 229 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 SYT11Q9BT88 431 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 TMEM134Q9H6X4 195 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 GBA2Q9HCG7 927 aaPredicted RBP10.42□□□□□ -0.74
CLIP1-212ENST00000540304 FAM53CQ9NYF3 392 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 INTUQ9ULD6 942 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 COQ4Q9Y3A0 265 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 RRP15Q9Y3B9 282 aaKnown RBP10.42□□□□□ -0.74
CLIP1-212ENST00000540304 HYOU1Q9Y4L1 999 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 PCDHGC5Q9Y5F6 944 aa10.42□□□□□ -0.74
CLIP1-212ENST00000540304 ZNF233A6NK53 670 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 GAS2O43903 313 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 LRRN2O75325 713 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 TCP1P17987 556 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 MARK3P27448 753 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SLC26A2P50443 739 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 CLCN6P51797 869 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 MKRN3Q13064 507 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 CAPSQ13938 189 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SETDB1Q15047 1291 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SLFN12LQ6IEE8 588 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 TRIM50Q86XT4 487 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SUGP1Q8IWZ8 645 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SLC30A5Q8TAD4 765 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 LNX1Q8TBB1 728 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 CAPZA3Q96KX2 299 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 PARD6BQ9BYG5 372 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SUDS3Q9H7L9 328 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 FOXN3O00409 490 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 PALMO75781 387 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 ECM2O94769 699 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 H2AFZP0C0S5 128 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 GPC3P51654 580 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 IFI16Q16666 785 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 ZNF792Q3KQV3 632 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 IER5Q5VY09 327 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 POTEHQ6S545 545 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 H2AFVQ71UI9 128 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 ABRAQ8N0Z2 381 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 FBXL13Q8NEE6 735 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 OLIG1Q8TAK6 271 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 CAGE1Q8TC20 777 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 U2AF1L4Q8WU68 220 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 TCP11Q8WWU5 503 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 FAM84AQ96KN4 292 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 MMS19Q96T76 1030 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 PSMB7Q99436 277 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 POP1Q99575 1024 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 SMARCAD1Q9H4L7 1026 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 MORF4L1Q9UBU8 362 aa10.41□□□□□ -0.74
CLIP1-212ENST00000540304 DIS3Q9Y2L1 958 aaKnown RBP10.41□□□□□ -0.74
CLIP1-212ENST00000540304 ZNF185O15231 689 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ADCY3O60266 1144 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 DLATP10515 647 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ADORA2AP29274 412 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 PSMD6Q15008 389 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 PLCB4Q15147 1175 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 GLYCTKQ8IVS8 523 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 C2orf69Q8N8R5 385 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 MSANTD4Q8NCY6 345 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 PSPC1Q8WXF1 523 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 SEMA4DQ92854 862 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 COPS5Q92905 334 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ELMO3Q96BJ8 720 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 OSBPL9Q96SU4 736 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ANKZF1Q9H8Y5 726 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 PDGFCQ9NRA1 345 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 TOPORSQ9NS56 1045 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 AGO2Q9UKV8 859 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 IVNS1ABPQ9Y6Y0 642 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 A0A0A6YYK5 440 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 STRNO43815 780 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ATXN8OSP0DMR3 200 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 TNFAIP3P21580 790 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 DNA2P51530 1060 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 EFNA5P52803 228 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 MFAP3P55082 362 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 DRP2Q13474 957 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 ZRSR2Q15696 482 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 NFRKBQ6P4R8 1299 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 TMCO3Q6UWJ1 677 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 SV2AQ7L0J3 742 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 NOA1Q8NC60 698 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 PRPF31Q8WWY3 499 aaKnown RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 NT5C1BQ96P26 610 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 JPH2Q9BR39 696 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-212ENST00000540304 TLR10Q9BXR5 811 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 VTA1Q9NP79 307 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 RAB20Q9NX57 234 aa10.4□□□□□ -0.74
CLIP1-212ENST00000540304 IGKV6-21A0A0C4DH24 114 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 GRID2IPA4D2P6 1211 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZBTB42B2RXF5 422 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 NCK2O43639 380 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms