RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NEMFO60524 1076 aa15.04■□□□□ -0
SS18-204ENST00000539244 DTNBO60941 627 aa15.04■□□□□ -0
SS18-204ENST00000539244 MYBP10242 640 aa15.04■□□□□ -0
SS18-204ENST00000539244 ANAPC15P60006 121 aa15.04■□□□□ -0
SS18-204ENST00000539244 TUSC3Q13454 348 aa15.04■□□□□ -0
SS18-204ENST00000539244 HTR4Q13639 388 aa15.04■□□□□ -0
SS18-204ENST00000539244 ANKRD1Q15327 319 aa15.04■□□□□ -0
SS18-204ENST00000539244 CDR2LQ86X02 465 aaPredicted RBP15.04■□□□□ -0
SS18-204ENST00000539244 ADSSL1Q8N142 457 aa15.04■□□□□ -0
SS18-204ENST00000539244 PIGOQ8TEQ8 1089 aa15.04■□□□□ -0
SS18-204ENST00000539244 FZD8Q9H461 694 aa15.04■□□□□ -0
SS18-204ENST00000539244 PIDD1Q9HB75 910 aa15.04■□□□□ -0
SS18-204ENST00000539244 PARP2Q9UGN5 583 aa15.04■□□□□ -0
SS18-204ENST00000539244 FBXW11Q9UKB1 542 aa15.04■□□□□ -0
SS18-204ENST00000539244 FANCMQ8IYD8 2048 aa15.04■□□□□ -0
SS18-204ENST00000539244 WNT7AO00755 349 aa15.03■□□□□ -0
SS18-204ENST00000539244 USO1O60763 962 aaKnown RBP15.03■□□□□ -0
SS18-204ENST00000539244 TADA2AO75478 443 aa15.03■□□□□ -0
SS18-204ENST00000539244 SPATA31C1P0DKV0 1188 aa15.03■□□□□ -0
SS18-204ENST00000539244 RPL17P18621 184 aaKnown RBP15.03■□□□□ -0
SS18-204ENST00000539244 HOXA9P31269 272 aa15.03■□□□□ -0
SS18-204ENST00000539244 TXKP42681 527 aa15.03■□□□□ -0
SS18-204ENST00000539244 RTP2Q5QGT7 225 aa15.03■□□□□ -0
SS18-204ENST00000539244 GET4Q7L5D6 327 aaPredicted RBP15.03■□□□□ -0
SS18-204ENST00000539244 ERMP1Q7Z2K6 904 aa15.03■□□□□ -0
SS18-204ENST00000539244 MCPH1Q8NEM0 835 aa15.03■□□□□ -0
SS18-204ENST00000539244 GPR152Q8TDT2 470 aa15.03■□□□□ -0
SS18-204ENST00000539244 PIK3R5Q8WYR1 880 aa15.03■□□□□ -0
SS18-204ENST00000539244 GTF3C6Q969F1 213 aa15.03■□□□□ -0
SS18-204ENST00000539244 PAAF1Q9BRP4 392 aa15.03■□□□□ -0
SS18-204ENST00000539244 TBC1D17Q9HA65 648 aa15.03■□□□□ -0
SS18-204ENST00000539244 ARHGEF3Q9NR81 526 aa15.03■□□□□ -0
SS18-204ENST00000539244 KLK14Q9P0G3 267 aa15.03■□□□□ -0
SS18-204ENST00000539244 DLGAP2Q9P1A6 1054 aa15.03■□□□□ -0
SS18-204ENST00000539244 DAXXQ9UER7 740 aaPredicted RBP15.03■□□□□ -0
SS18-204ENST00000539244 CA14Q9ULX7 337 aa15.03■□□□□ -0
SS18-204ENST00000539244 VWA8A3KMH1 1905 aa15.02■□□□□ -0
SS18-204ENST00000539244 POTEMA6NI47 508 aa15.02■□□□□ -0
SS18-204ENST00000539244 LRRIQ4A6NIV6 560 aa15.02■□□□□ -0
SS18-204ENST00000539244 BTBD18B2RXH4 712 aa15.02■□□□□ -0
SS18-204ENST00000539244 PTGESO14684 152 aa15.02■□□□□ -0
SS18-204ENST00000539244 POU2F2P09086 479 aa15.02■□□□□ -0
SS18-204ENST00000539244 HNRNPA1P09651 372 aaKnown RBP eCLIP15.02■□□□□ -0
SS18-204ENST00000539244 NAB2Q15742 525 aa15.02■□□□□ -0
SS18-204ENST00000539244 PRSS55Q6UWB4 352 aaPredicted RBP15.02■□□□□ -0
SS18-204ENST00000539244 GLYCTKQ8IVS8 523 aa15.02■□□□□ -0
SS18-204ENST00000539244 LNX1Q8TBB1 728 aaPredicted RBP15.02■□□□□ -0
SS18-204ENST00000539244 RABGGTAQ92696 567 aa15.02■□□□□ -0
SS18-204ENST00000539244 CLSTN3Q9BQT9 956 aa15.02■□□□□ -0
SS18-204ENST00000539244 TTPALQ9BTX7 342 aa15.02■□□□□ -0
SS18-204ENST00000539244 TUFT1Q9NNX1 390 aa15.02■□□□□ -0
SS18-204ENST00000539244 GPRC5CQ9NQ84 441 aa15.02■□□□□ -0
SS18-204ENST00000539244 CACNG4Q9UBN1 327 aa15.02■□□□□ -0
SS18-204ENST00000539244 NUMBLQ9Y6R0 609 aa15.02■□□□□ -0
SS18-204ENST00000539244 EP300Q09472 2414 aaPredicted RBP15.02□□□□□ -0.01
SS18-204ENST00000539244 STK25O00506 426 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 N4BP3O15049 544 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 KIF4AO95239 1232 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 FSHRP23945 695 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 ELAVL2Q12926 359 aaKnown RBP15.01□□□□□ -0.01
SS18-204ENST00000539244 ME3Q16798 604 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 PDXDC1Q6P996 788 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 CATSPER3Q86XQ3 398 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 ZBTB8OSQ8IWT0 167 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 DIS3L2Q8IYB7 885 aaKnown RBP15.01□□□□□ -0.01
SS18-204ENST00000539244 NSUN7Q8NE18 718 aaKnown RBP15.01□□□□□ -0.01
SS18-204ENST00000539244 C2orf40Q9H1Z8 148 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 TMEM60Q9H2L4 133 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 PDZD7Q9H5P4 517 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 SIT1Q9Y3P8 196 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 MYH15Q9Y2K3 1946 aa15.01□□□□□ -0.01
SS18-204ENST00000539244 CACNA1IQ9P0X4 2223 aa15□□□□□ -0.01
SS18-204ENST00000539244 A0A087WWV3 80 aa15□□□□□ -0.01
SS18-204ENST00000539244 CASTOR2A6NHX0 329 aa15□□□□□ -0.01
SS18-204ENST00000539244 TTLL13PA6NNM8 815 aa15□□□□□ -0.01
SS18-204ENST00000539244 RECQL4O94761 1208 aa15□□□□□ -0.01
SS18-204ENST00000539244 LARGE1O95461 756 aa15□□□□□ -0.01
SS18-204ENST00000539244 LMNAP02545 664 aaKnown RBP15□□□□□ -0.01
SS18-204ENST00000539244 THP07101 528 aa15□□□□□ -0.01
SS18-204ENST00000539244 ATP2B1P20020 1258 aa15□□□□□ -0.01
SS18-204ENST00000539244 RFX1P22670 979 aa15□□□□□ -0.01
SS18-204ENST00000539244 ID4P47928 161 aa15□□□□□ -0.01
SS18-204ENST00000539244 STARD6P59095 220 aa15□□□□□ -0.01
SS18-204ENST00000539244 PSMD5Q16401 504 aa15□□□□□ -0.01
SS18-204ENST00000539244 FAM171A1Q5VUB5 890 aa15□□□□□ -0.01
SS18-204ENST00000539244 DCLRE1AQ6PJP8 1040 aa15□□□□□ -0.01
SS18-204ENST00000539244 GRASPQ7Z6J2 395 aaPredicted RBP15□□□□□ -0.01
SS18-204ENST00000539244 NECAB1Q8N987 351 aa15□□□□□ -0.01
SS18-204ENST00000539244 FGF14Q92915 247 aa15□□□□□ -0.01
SS18-204ENST00000539244 NACC1Q96RE7 527 aa15□□□□□ -0.01
SS18-204ENST00000539244 POLR3CQ9BUI4 534 aaPredicted RBP15□□□□□ -0.01
SS18-204ENST00000539244 CCDC113Q9H0I3 377 aa15□□□□□ -0.01
SS18-204ENST00000539244 SNTG2Q9NY99 539 aa15□□□□□ -0.01
SS18-204ENST00000539244 CDH7Q9ULB5 785 aa15□□□□□ -0.01
SS18-204ENST00000539244 ZNF292O60281 2723 aa15□□□□□ -0.01
SS18-204ENST00000539244 NOTCH4Q99466 2003 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 TMEM189-UBE2V1I3L0A0 370 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 ACKR2O00590 384 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 MED24O75448 989 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 C8AP07357 584 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms