RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	ELAVL2	Q12926	359 aa	Known RBP	13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MCM6	Q14566	821 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	STK38	Q15208	465 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SMAD2	Q15796	467 aa	Known RBP	13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FAM173B	Q6P4H8	233 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ALKAL1	Q6UXT8	129 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SV2B	Q7L1I2	683 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	HAUS6	Q7Z4H7	955 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TMEM173	Q86WV6	379 aa	Predicted RBP	13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CDR2L	Q86X02	465 aa	Predicted RBP	13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FAM178B	Q8IXR5	827 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	LRRC15	Q8TF66	581 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CASP10	Q92851	521 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	HVCN1	Q96D96	273 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	UROC1	Q96N76	676 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PLIN2	Q99541	437 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	POP1	Q99575	1024 aa	Known RBP	13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	HERC2P3	Q9BVR0	1158 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	LRRC27	Q9C0I9	530 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	GBP3	Q9H0R5	595 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CDT1	Q9H211	546 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FOXD4L1	Q9NU39	408 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CLEC1B	Q9P126	229 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CIT	O14578	2027 aa		13.5	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MUC3A	Q02505	3323 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SFI1	A8K8P3	1242 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	HIDE1	A8MVS5	230 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PTGES	O14684	152 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MBTPS2	O43462	519 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TRAK2	O60296	914 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CUTA	O60888	179 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CXCL14	O95715	111 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	GLP2R	O95838	553 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	YARS	P54577	528 aa	Known RBP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	GTF2B	Q00403	316 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CREM	Q03060	361 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	NAB2	Q15742	525 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ZNF568	Q3ZCX4	644 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PLPP4	Q5VZY2	271 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	USP49	Q70CQ1	688 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FIZ1	Q96SL8	496 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PYM1	Q9BRP8	204 aa	Known RBP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TARS2	Q9BW92	718 aa	Known RBP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	APOL6	Q9BWW8	343 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	EMILIN2	Q9BXX0	1053 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	IGFLR1	Q9H665	355 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PLEKHA5	Q9HAU0	1116 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	POLD4	Q9HCU8	107 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MRPL17	Q9NRX2	175 aa	Known RBP	13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CHST7	Q9NS84	486 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SLC38A7	Q9NVC3	462 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MARCH5	Q9NX47	278 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SNTG2	Q9NY99	539 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TRIP11	Q15643	1979 aa		13.49	□□□□□ -0.25
CLTCL1-205	ENST00000538828		H3BQ06	376 aa	Predicted RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CLDN3	O15551	220 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TBCA	O75347	108 aa	Known RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	KCNE1	P15382	129 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	GAP43	P17677	238 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	OR1G1	P47890	313 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	DSG1	Q02413	1049 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	DLX2	Q07687	328 aa	Predicted RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ALCAM	Q13740	583 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PTPN14	Q15678	1187 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	TPRN	Q4KMQ1	711 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CNNM4	Q6P4Q7	775 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PDXDC1	Q6P996	788 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	RBM23	Q86U06	439 aa	Known RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MYCT1	Q8N699	235 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	HDAC7	Q8WUI4	952 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	DDX27	Q96GQ7	796 aa	Known RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CLIC6	Q96NY7	704 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ACAP3	Q96P50	834 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PPP1R10	Q96QC0	940 aa	Known RBP	13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	VN1R3	Q9BXE9	311 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	RHOBTB2	Q9BYZ6	727 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	MAGEF1	Q9HAY2	307 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	RXFP1	Q9HBX9	757 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	OLFML3	Q9NRN5	406 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	DZANK1	Q9NVP4	752 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FNIP2	Q9P278	1114 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	DPP7	Q9UHL4	492 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ADAM28	Q9UKQ2	775 aa		13.48	□□□□□ -0.25
CLTCL1-205	ENST00000538828	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	FRMD3	A2A2Y4	597 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	C19orf67	A6NJJ6	358 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PER2	O15055	1255 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	LINC01565	O15544	149 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CLASP2	O75122	1294 aa	Known RBP	13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	PAPLN	O95428	1278 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	KRT18	P05783	430 aa	Known RBP	13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	UROD	P06132	367 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ADRB2	P07550	413 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	LIG1	P18858	919 aa		13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	CEBPZ	Q03701	1054 aa	Known RBP	13.47	□□□□□ -0.25
CLTCL1-205	ENST00000538828	ITIH3	Q06033	890 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms