RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 B3GALT6Q96L58 329 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 TBC1D22BQ9NU19 505 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 HCFC1R1Q9NWW0 138 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SAMM50Q9Y512 469 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 PCDHA10Q9Y5I2 948 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SF3B1O75533 1304 aaKnown RBP eCLIP10.31□□□□□ -0.768e-6■■■■■ 107
USP28-205ENST00000537706 A0A087WZ62 844 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 CYSRT1A8MQ03 144 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 IFIT3O14879 490 aaKnown RBP10.3□□□□□ -0.76
USP28-205ENST00000537706 ARHGAP6O43182 974 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 EFEMP2O95967 443 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 PSMD5Q16401 504 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 Q6ZS52 159 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 TEX2Q8IWB9 1127 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 CAMKK1Q8N5S9 505 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 PIK3R5Q8WYR1 880 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 FDXACB1Q9BRP7 624 aaPredicted RBP10.3□□□□□ -0.76
USP28-205ENST00000537706 TTPALQ9BTX7 342 aa10.3□□□□□ -0.76
USP28-205ENST00000537706 CAPN9O14815 690 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 ZNF862O60290 1169 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 LRG1P02750 347 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 OATP04181 439 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 CEBPBP17676 345 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 PRSS55Q6UWB4 352 aaPredicted RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 CYP2U1Q7Z449 544 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 HAUS6Q7Z4H7 955 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 RALGPS2Q86X27 583 aaPredicted RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 CHCHD4Q8N4Q1 142 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 GPR62Q9BZJ7 368 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 FRYLO94915 3013 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 SPAARA0A1B0GVQ0 90 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 MEIS1O00470 390 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 MICAL2O94851 1124 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 GBP1P32455 592 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 ELF1P32519 619 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 PXNP49023 591 aaPredicted RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 DSC1Q08554 894 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 ELAVL2Q12926 359 aaKnown RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 FAM78AQ5JUQ0 283 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 CYP4A22Q5TCH4 519 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 PLA2G4DQ86XP0 818 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 CEP57Q86XR8 500 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 ELMOD1Q8N336 334 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 SMARCD2Q92925 531 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 JPH2Q9BR39 696 aaPredicted RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 NUSAP1Q9BXS6 441 aaKnown RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 DUSP15Q9H1R2 295 aaPredicted RBP10.29□□□□□ -0.76
USP28-205ENST00000537706 AGPAT5Q9NUQ2 364 aa10.29□□□□□ -0.76
USP28-205ENST00000537706 IPO5O00410 1097 aaKnown RBP10.28□□□□□ -0.76
USP28-205ENST00000537706 CAPNS1P04632 268 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 FCARP24071 287 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 SPIRE1Q08AE8 756 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 NCBP1Q09161 790 aaKnown RBP10.28□□□□□ -0.76
USP28-205ENST00000537706 PTPAQ15257 358 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 ERICH6BQ5W0A0 696 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 VITQ6UXI7 678 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 PDZD4Q76G19 769 aaPredicted RBP10.28□□□□□ -0.76
USP28-205ENST00000537706 MFSD6LQ8IWD5 586 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 HDDC3Q8N4P3 179 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 LSM14AQ8ND56 463 aaKnown RBP10.28□□□□□ -0.76
USP28-205ENST00000537706 ASB16Q96NS5 453 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 HNRNPABQ99729 332 aaKnown RBP10.28□□□□□ -0.76
USP28-205ENST00000537706 CLSTN3Q9BQT9 956 aa10.28□□□□□ -0.76
USP28-205ENST00000537706 IGF2RP11717 2491 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 ARL5CA6NH57 179 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 SPECC1L-ADORA2AF8WAN1 911 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 CDX4O14627 284 aaPredicted RBP10.27□□□□□ -0.76
USP28-205ENST00000537706 PRB1P04280 392 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 SCNN1GP51170 649 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 AFF1P51825 1210 aaKnown RBP10.27□□□□□ -0.76
USP28-205ENST00000537706 ATXN3P54252 364 aaPredicted RBP10.27□□□□□ -0.76
USP28-205ENST00000537706 RAB33AQ14088 237 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 RHPN2Q8IUC4 686 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 NLRP4Q96MN2 994 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 GAD1Q99259 594 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 MAP3K14Q99558 947 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 ZNF577Q9BSK1 485 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 SUCLA2Q9P2R7 463 aaPredicted RBP10.27□□□□□ -0.76
USP28-205ENST00000537706 RAXQ9Y2V3 346 aa10.27□□□□□ -0.76
USP28-205ENST00000537706 CEP295Q9C0D2 2601 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 WDR27A2RRH5 827 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 MYBPHLA2RUH7 354 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 SLC38A8A6NNN8 435 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 UPK3BL1B0FP48 263 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 WDR64B1ANS9 1081 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 UPK3BL2E5RIL1 263 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 ATXN7O15265 892 aaPredicted RBP10.27□□□□□ -0.77
USP28-205ENST00000537706 CHADO15335 359 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 EXTL3O43909 919 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 MLH1P40692 756 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 SETQ01105 290 aaPredicted RBP10.27□□□□□ -0.77
USP28-205ENST00000537706 PRKCEQ02156 737 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 HSP90AA2PQ14568 343 aaPredicted RBP10.27□□□□□ -0.77
USP28-205ENST00000537706 RAB44Q7Z6P3 723 aaPredicted RBP10.27□□□□□ -0.77
USP28-205ENST00000537706 GPR88Q9GZN0 384 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 GIT1Q9Y2X7 761 aa10.27□□□□□ -0.77
USP28-205ENST00000537706 ASH1LQ9NR48 2969 aaKnown RBP10.26□□□□□ -0.77
USP28-205ENST00000537706 CTHP32929 405 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 DPP6P42658 865 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 PON2Q15165 354 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms