RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 C1RP00736 705 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 SKIP12755 728 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 MPLP40238 635 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 GPC3P51654 580 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 DSG1Q02413 1049 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 ITGB3BPQ13352 177 aaPredicted RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 GAS6Q14393 721 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 GRM4Q14833 912 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 MCMDC2Q4G0Z9 681 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 TWF2Q6IBS0 349 aaKnown RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 GLYCTKQ8IVS8 523 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 CKAP2LQ8IYA6 745 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 RNF168Q8IYW5 571 aaPredicted RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 SPEM1Q8N4L4 309 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 LRRC71Q8N4P6 559 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 TRAIPQ9BWF2 469 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 ZNF302Q9NR11 478 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 VPS45Q9NRW7 570 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 KALRNO60229 2985 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 EVPLQ92817 2033 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 COL4A2P08572 1712 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 TTC24A2A3L6 582 aaPredicted RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 SPDYE3A6NKU9 549 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 C4orf47A7E2U8 309 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 DDX39AO00148 427 aaKnown RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 ST8SIA5O15466 376 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 CSDE1O75534 798 aaKnown RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 ALDH2P05091 517 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 HNRNPA1P09651 372 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-237ENST00000534082 CEACAM1P13688 526 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 NDUFV2P19404 249 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 ATP4AP20648 1035 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 RAP1GAPP47736 663 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 RAB27AP51159 221 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 AFF1P51825 1210 aaKnown RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 SEC23AQ15436 765 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 UBE2SQ16763 222 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 LIN9Q5TKA1 542 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 DAB2IPQ5VWQ8 1189 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 LILRA6Q6PI73 481 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 ABHD15Q6UXT9 468 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 CACNA2D4Q7Z3S7 1137 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 WDR5BQ86VZ2 330 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 LINC01465Q8N7H1 131 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 ING5Q8WYH8 240 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 FAM3CQ92520 227 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 B3GALT6Q96L58 329 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 FAM193BQ96PV7 902 aaPredicted RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 PLA2G2FQ9BZM2 168 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 CHST12Q9NRB3 414 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-237ENST00000534082 FAM105AQ9NUU6 356 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 CACNA2D2Q9NY47 1150 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 FBXW11Q9UKB1 542 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 KLK13Q9UKR3 277 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 POLIQ9UNA4 740 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 CEP131Q9UPN4 1083 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 PIN4Q9Y237 131 aaKnown RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 MSRB2Q9Y3D2 182 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 PCDHGA5Q9Y5G8 931 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 BAZ2BQ9UIF8 2168 aaKnown RBP7.3□□□□□ -1.24
CD44-237ENST00000534082 HECTD1Q9ULT8 2610 aa7.3□□□□□ -1.24
CD44-237ENST00000534082 SDK1Q7Z5N4 2213 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 F8W810 466 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 CCL16O15467 120 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 MAGEB2O15479 319 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 XYLBO75191 536 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 EFEMP2O95967 443 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 POMCP01189 267 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 C8AP07357 584 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 CHRNB1P11230 501 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 MS4A1P11836 297 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 JUNDP17535 347 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 RPL17P18621 184 aaKnown RBP7.29□□□□□ -1.24
CD44-237ENST00000534082 MX1P20591 662 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 CSRP1P21291 193 aaKnown RBP7.29□□□□□ -1.24
CD44-237ENST00000534082 SFPQP23246 707 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD44-237ENST00000534082 TMOD1P28289 359 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 HOXC13P31276 330 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 KIF5BP33176 963 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 OR1G1P47890 313 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 TROAPQ12815 778 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 NMIQ13287 307 aaPredicted RBP7.29□□□□□ -1.24
CD44-237ENST00000534082 GRM2Q14416 872 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 PPM1LQ5SGD2 360 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 SWSAP1Q6NVH7 229 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 EFCAB12Q6NXP0 572 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 MIS18BP1Q6P0N0 1132 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 AGMOQ6ZNB7 445 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 Q6ZS52 159 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 TRMT1LQ7Z2T5 733 aaKnown RBP7.29□□□□□ -1.24
CD44-237ENST00000534082 KBTBD6Q86V97 674 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 LURAP1LQ8IV03 231 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 GLIS3Q8NEA6 775 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 SPIRE2Q8WWL2 714 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 GAB3Q8WWW8 586 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 EVI5LQ96CN4 794 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 PGBD4Q96DM1 585 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 MBOAT7Q96N66 472 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 MXRA8Q9BRK3 442 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms