RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 HNRNPCL2B2RXH8 293 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 E9PMD0 336 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 NPHS1O60500 1241 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 TSPAN1O60635 241 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 KPNA6O60684 536 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 HNRNPCL1O60812 293 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 SMIM24O75264 130 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 RASSF9O75901 435 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 YEATS4O95619 227 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 S100A6P06703 90 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 PDGFRBP09619 1106 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 PARP1P09874 1014 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 HSPA1AP0DMV8 641 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 HSPA1BP0DMV9 641 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 TAL1P17542 331 aaPredicted RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 IL4RP24394 825 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 LMAN1P49257 510 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 SERPINB8P50452 374 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 EVA1CP58658 441 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ST5P78524 1137 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 DR1Q01658 176 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 KIF5AQ12840 1032 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 RIPK1Q13546 671 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 KCNMB1Q16558 191 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 CCDC93Q567U6 631 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 CFAP157Q5JU67 520 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 CCDC183Q5T5S1 534 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 STYK1Q6J9G0 422 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 C3orf62Q6ZUJ4 267 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ZNF804AQ7Z570 1209 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 SLC7A5P1Q8MH63 180 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 NSUN7Q8NE18 718 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 GDAP1Q8TB36 358 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 FAM168AQ92567 244 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 APPBP2Q92624 585 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ATP6V0A1Q93050 837 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 GTF3C6Q969F1 213 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 OPTNQ96CV9 577 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ASIC4Q96FT7 647 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 LIN37Q96GY3 246 aaPredicted RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 NEUROD6Q96NK8 337 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 TRAPPC9Q96Q05 1148 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 SPAG5Q96R06 1193 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 TSC22D3Q99576 134 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 XPO4Q9C0E2 1151 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 VIPAS39Q9H9C1 493 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 KCNK12Q9HB15 430 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 PARVBQ9HBI1 364 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 EPB41L4AQ9HCS5 686 aaPredicted RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 DMAP1Q9NPF5 467 aaPredicted RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 PDRG1Q9NUG6 133 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.01□□□□□ -1.45
CD44-236ENST00000533222 YBX2Q9Y2T7 364 aaKnown RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 SH3GLB1Q9Y371 365 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 CD2APQ9Y5K6 639 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 NR2E3Q9Y5X4 410 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.01□□□□□ -1.45
CD44-236ENST00000533222 ANKRD30BQ9BXX2 1392 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 RAB3GAP2Q9H2M9 1393 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 SBNO2Q9Y2G9 1366 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ATP10AO60312 1499 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 CAMSAP2Q08AD1 1489 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 PLB1Q6P1J6 1458 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 LOC100996750A0A140TA64 210 aa6□□□□□ -1.45
CD44-236ENST00000533222 GOLGA6L7A0A1B0GV03 622 aa6□□□□□ -1.45
CD44-236ENST00000533222 TMEM247A6NEH6 219 aa6□□□□□ -1.45
CD44-236ENST00000533222 NDUFAB1O14561 156 aa6□□□□□ -1.45
CD44-236ENST00000533222 PRPF3O43395 683 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 CDC45O75419 566 aa6□□□□□ -1.45
CD44-236ENST00000533222 FUCA1P04066 466 aa6□□□□□ -1.45
CD44-236ENST00000533222 HSPA8P11142 646 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 SFTPCP11686 197 aa6□□□□□ -1.45
CD44-236ENST00000533222 ALOX15P16050 662 aaPredicted RBP6□□□□□ -1.45
CD44-236ENST00000533222 KIF5BP33176 963 aa6□□□□□ -1.45
CD44-236ENST00000533222 CCNG1P51959 295 aa6□□□□□ -1.45
CD44-236ENST00000533222 RPL11P62913 178 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 CYP4F8P98187 520 aa6□□□□□ -1.45
CD44-236ENST00000533222 PDE1BQ01064 536 aa6□□□□□ -1.45
CD44-236ENST00000533222 BLMHQ13867 455 aa6□□□□□ -1.45
CD44-236ENST00000533222 RAPGEF1Q13905 1077 aa6□□□□□ -1.45
CD44-236ENST00000533222 NDUFA5Q16718 116 aa6□□□□□ -1.45
CD44-236ENST00000533222 FAM133BQ5BKY9 247 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 FGD2Q7Z6J4 655 aa6□□□□□ -1.45
CD44-236ENST00000533222 HOMER1Q86YM7 354 aa6□□□□□ -1.45
CD44-236ENST00000533222 RAB11FIP4Q86YS3 637 aa6□□□□□ -1.45
CD44-236ENST00000533222 CCDC13Q8IYE1 715 aa6□□□□□ -1.45
CD44-236ENST00000533222 ARHGAP18Q8N392 663 aa6□□□□□ -1.45
CD44-236ENST00000533222 CCDC89Q8N998 374 aa6□□□□□ -1.45
CD44-236ENST00000533222 UHMK1Q8TAS1 419 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 DCAF4Q8WV16 495 aa6□□□□□ -1.45
CD44-236ENST00000533222 LEO1Q8WVC0 666 aaPredicted RBP6□□□□□ -1.45
CD44-236ENST00000533222 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6□□□□□ -1.45
CD44-236ENST00000533222 HVCN1Q96D96 273 aa6□□□□□ -1.45
CD44-236ENST00000533222 INTS4Q96HW7 963 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 SCLYQ96I15 445 aa6□□□□□ -1.45
CD44-236ENST00000533222 ZNF496Q96IT1 587 aaPredicted RBP6□□□□□ -1.45
CD44-236ENST00000533222 TMX3Q96JJ7 454 aa6□□□□□ -1.45
CD44-236ENST00000533222 GDAP1L1Q96MZ0 367 aa6□□□□□ -1.45
CD44-236ENST00000533222 SPZ1Q9BXG8 430 aa6□□□□□ -1.45
CD44-236ENST00000533222 KRTAP4-6Q9BYQ5 205 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms