RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 LRSAM1Q6UWE0 723 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 RNF19BQ6ZMZ0 732 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 AGMOQ6ZNB7 445 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 RETREG3Q86VR2 466 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 PALB2Q86YC2 1186 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 GLYCTKQ8IVS8 523 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 NPAS3Q8IXF0 933 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 ZNF654Q8IZM8 581 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 ZCCHC14Q8WYQ9 949 aaKnown RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 MBOAT7Q96N66 472 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 SPSB2Q99619 263 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 GCOM2Q9BZD3 368 aaPredicted RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 NDRG2Q9UN36 371 aaKnown RBP9.27□□□□□ -0.93
CD44-232ENST00000531118 PCDHB15Q9Y5E8 787 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 CNTNAP2Q9UHC6 1331 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 ADAMTS20P59510 1910 aa9.27□□□□□ -0.93
CD44-232ENST00000531118 hCG_1642624A0A1W2PR95 340 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 CHURC1-FNTBB4DL54 471 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 F8W810 466 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 TAF4O00268 1085 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 GAS2O43903 313 aaKnown RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 ZNF623O75123 536 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 POMCP01189 267 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 RPL17P18621 184 aaKnown RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 SMARCA1P28370 1054 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 SREBF1P36956 1147 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 OR1G1P47890 313 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 FNTBP49356 437 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 ANTXR2P58335 489 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 SATB1Q01826 763 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 PRKCEQ02156 737 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 FOXC1Q12948 553 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 DRP2Q13474 957 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 MSS51Q4VC12 460 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 PSAPL1Q6NUJ1 521 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 ZNF746Q6NUN9 644 aaPredicted RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 LILRA6Q6PI73 481 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 NIPA1Q7RTP0 329 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 HEATR3Q7Z4Q2 680 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 SMAP1Q8IYB5 467 aaPredicted RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 SRBD1Q8N5C6 995 aaKnown RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 FAM160A2Q8N612 972 aaPredicted RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 C12orf50Q8NA57 414 aaPredicted RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 ITFG1Q8TB96 612 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 DNASE1L2Q92874 299 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 PGBD4Q96DM1 585 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 B3GALT6Q96L58 329 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 MAP3K14Q99558 947 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 USB1Q9BQ65 265 aaKnown RBP9.26□□□□□ -0.93
CD44-232ENST00000531118 IL25Q9H293 177 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.26□□□□□ -0.93
CD44-232ENST00000531118 RXFP3Q9NSD7 469 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 FNIP2Q9P278 1114 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 GABBR1Q9UBS5 961 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 TCEAL9Q9UHQ7 104 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 NAV2Q8IVL1 2488 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 ARID2Q68CP9 1835 aa9.26□□□□□ -0.93
CD44-232ENST00000531118 ITPR1Q14643 2758 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 IGLV3-22A0A075B6J6 115 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 A0A087WZ62 844 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 ZNF862O60290 1169 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 ECI2O75521 394 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 EPN2O95208 641 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 PSAPP07602 524 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 CREMQ03060 361 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 ZNF252P-AS1Q0IIN9 211 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 STPG1Q5TH74 334 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 LIN9Q5TKA1 542 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 ANKRD45Q5TZF3 282 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 FUT10Q6P4F1 479 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 CATSPER4Q7RTX7 472 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 RALYLQ86SE5 291 aaKnown RBP9.25□□□□□ -0.93
CD44-232ENST00000531118 PLA2G4DQ86XP0 818 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 COLGALT2Q8IYK4 626 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 CMTR1Q8N1G2 835 aaKnown RBP9.25□□□□□ -0.93
CD44-232ENST00000531118 ING5Q8WYH8 240 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 GATA6Q92908 595 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 LZTS2Q9BRK4 669 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 FDXACB1Q9BRP7 624 aaPredicted RBP9.25□□□□□ -0.93
CD44-232ENST00000531118 CHST7Q9NS84 486 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 AGPAT5Q9NUQ2 364 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 RCAN3Q9UKA8 241 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 WASF3Q9UPY6 502 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 PCDHB2Q9Y5E7 798 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 IGSF10Q6WRI0 2623 aa9.25□□□□□ -0.93
CD44-232ENST00000531118 NUP205Q92621 2012 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CACNA1EQ15878 2313 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 FAM86B1E9PN63 330 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 IPO5O00410 1097 aaKnown RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 MAN2B1O00754 1011 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CCL16O15467 120 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 PAPSS2O95340 614 aaPredicted RBP9.24□□□□□ -0.93
CD44-232ENST00000531118 ALDH2P05091 517 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 C8AP07357 584 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 POU2F2P09086 479 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 HNRNPA1P09651 372 aaKnown RBP eCLIP9.24□□□□□ -0.93
CD44-232ENST00000531118 FAM86B2P0C5J1 330 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 SPINK2P20155 84 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 HOXA9P31269 272 aa9.24□□□□□ -0.93
CD44-232ENST00000531118 CNR2P34972 360 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms