RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 TECTAO75443 2155 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 CCDC169A6NNP5 214 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 RECQL4O94761 1208 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 THP07101 528 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 NAMPTP43490 491 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 TCF15Q12870 199 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 TUSC3Q13454 348 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 PPP2R5AQ15172 486 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 ZRSR1Q15695 479 aaKnown RBP14.34□□□□□ -0.11
CPSF1-204ENST00000529288 EEF1DP3Q658K8 133 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 MCTP1Q6DN14 999 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 C15orf39Q6ZRI6 1047 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 FLCNQ8NFG4 579 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 SNX29Q8TEQ0 813 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 ATOH1Q92858 354 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-204ENST00000529288 CXCL16Q9H2A7 254 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 CHST7Q9NS84 486 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 FBXL21Q9UKT6 434 aa14.34□□□□□ -0.11
CPSF1-204ENST00000529288 H0Y858 1186 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 STK25O00506 426 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 ACKR2O00590 384 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 TGM5O43548 720 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 TRAPPC10P48553 1259 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 FXR2P51116 673 aaKnown RBP eCLIP14.33□□□□□ -0.12
CPSF1-204ENST00000529288 PTGDRQ13258 359 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 FAM187BQ17R55 369 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 FAM171A1Q5VUB5 890 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 RNF168Q8IYW5 571 aaPredicted RBP14.33□□□□□ -0.12
CPSF1-204ENST00000529288 C4orf32Q8N8J7 132 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 RAB34Q9BZG1 259 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.33□□□□□ -0.12
CPSF1-204ENST00000529288 PCDHB6Q9Y5E3 794 aa14.33□□□□□ -0.12
CPSF1-204ENST00000529288 SF3B1O75533 1304 aaKnown RBP eCLIP14.33□□□□□ -0.12
CPSF1-204ENST00000529288 PP2D1A8MPX8 630 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 E9PMD0 336 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 K7ERI5 159 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 PTGESO14684 152 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 KIF4AO95239 1232 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 EFEMP2O95967 443 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 EDN1P05305 212 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 TDGQ13569 410 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 GLRA4Q5JXX5 417 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 RTP2Q5QGT7 225 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 ATF7IP2Q5U623 682 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 ST13P5Q8NFI4 369 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-204ENST00000529288 CMASQ8NFW8 434 aaPredicted RBP14.32□□□□□ -0.12
CPSF1-204ENST00000529288 RSAD2Q8WXG1 361 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 STAMQ92783 540 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 KIFAP3Q92845 792 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 TTPALQ9BTX7 342 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 CCDC113Q9H0I3 377 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 KCNK12Q9HB15 430 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 WDR6Q9NNW5 1121 aaKnown RBP14.32□□□□□ -0.12
CPSF1-204ENST00000529288 DNM3Q9UQ16 869 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 CLUHO75153 1309 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 MUC6Q6W4X9 2439 aa14.32□□□□□ -0.12
CPSF1-204ENST00000529288 ARID2Q68CP9 1835 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 MUTP22033 750 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 RFX1P22670 979 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 CDC25AP30304 524 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 TOB1P50616 345 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-204ENST00000529288 EFNA5P52803 228 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 PEX3P56589 373 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 OSTNP61366 133 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 CREMQ03060 361 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 PSMD5Q16401 504 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 DCAF4L1Q3SXM0 396 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 NT5DC1Q5TFE4 455 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 KRT79Q5XKE5 535 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 DTHD1Q6ZMT9 781 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 GET4Q7L5D6 327 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-204ENST00000529288 TMEM105Q8N8V8 129 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 MYADMQ96S97 322 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 KIF2CQ99661 725 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 NT5C3AQ9H0P0 336 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 PLEKHA4Q9H4M7 779 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 FNIP2Q9P278 1114 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 POLIQ9UNA4 740 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 STK24Q9Y6E0 443 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 WDFY4Q6ZS81 3184 aa14.31□□□□□ -0.12
CPSF1-204ENST00000529288 NARSO43776 548 aaKnown RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 N4BP1O75113 896 aaKnown RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 HIP1RO75146 1068 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 CFHP08603 1231 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 HARSP12081 509 aaKnown RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 PDIA5Q14554 519 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 LIN9Q5TKA1 542 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 ASTLQ6HA08 431 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 CYP26C1Q6V0L0 522 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 APBB1IPQ7Z5R6 666 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 HDAC7Q8WUI4 952 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 ZNF707Q96C28 371 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-204ENST00000529288 PLIN2Q99541 437 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 TCHPQ9BT92 498 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 PRKD2Q9BZL6 878 aa14.3□□□□□ -0.12
CPSF1-204ENST00000529288 SFI1A8K8P3 1242 aa14.29□□□□□ -0.12
CPSF1-204ENST00000529288 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-204ENST00000529288 ZMYND10O75800 440 aa14.29□□□□□ -0.12
CPSF1-204ENST00000529288 B3GAT3O94766 335 aa14.29□□□□□ -0.12
CPSF1-204ENST00000529288 U2AF2P26368 475 aaKnown RBP eCLIP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms