RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CLEC3AO75596 197 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 NPTXRO95502 500 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 YEATS4O95619 227 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 SCGB1D2O95969 90 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 ASNSP08243 561 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 BMP3P12645 472 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 PAX3P23760 479 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 SMARCA1P28370 1054 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 EPHX2P34913 555 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 RAB27AP51159 221 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 NEK2P51955 445 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 NLRP12P59046 1061 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 ID3Q02535 119 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 GRIN1Q05586 938 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 STRN3Q13033 797 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 MTMR1Q13613 665 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 SETDB1Q15047 1291 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 DHCR24Q15392 516 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 ZNF174Q15697 407 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 CDC37Q16543 378 aaPredicted RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 NKG7Q16617 165 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 UBE2SQ16763 222 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 INF2Q27J81 1249 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 PLA2G4EQ3MJ16 856 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 USH1GQ495M9 461 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 TTC38Q5R3I4 469 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 HP1BP3Q5SSJ5 553 aaPredicted RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 GPATCH4Q5T3I0 446 aaKnown RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 CCDC183Q5T5S1 534 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 JAKMIP3Q5VZ66 844 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 PKN3Q6P5Z2 889 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 FGD2Q7Z6J4 655 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 GAS2L3Q86XJ1 694 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.68□□□□□ -1.66
CD44-226ENST00000527889 SDR16C5Q8N3Y7 309 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 GALNT11Q8NCW6 608 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 GSTCDQ8NEC7 633 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 KCNG4Q8TDN1 519 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 ZKSCAN4Q969J2 545 aaPredicted RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 PPP1R14AQ96A00 147 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 DCPSQ96C86 337 aaKnown RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 MTMR8Q96EF0 704 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 MRGPRX3Q96LB0 322 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 CLIC6Q96NY7 704 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 WRNIP1Q96S55 665 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 DPH2Q9BQC3 489 aaPredicted RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 VCPKMTQ9H867 229 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 FBXO28Q9NVF7 368 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 NOL7Q9UMY1 257 aaKnown RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 PCDHA6Q9UN73 950 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 PCDHA8Q9Y5H6 950 aa4.68□□□□□ -1.66
CD44-226ENST00000527889 TNPO3Q9Y5L0 923 aaKnown RBP4.68□□□□□ -1.66
CD44-226ENST00000527889 MUC3AQ02505 3323 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 GLTPD2A6NH11 291 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SPDYE3A6NKU9 549 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZBTB5O15062 677 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 DDX3YO15523 660 aaKnown RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 GPR39O43194 453 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 AKAP10O43572 662 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 PPFIA4O75335 1185 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 USP2O75604 605 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 GBP1P32455 592 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 MCM7P33993 719 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 CHRNA4P43681 627 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ADCY7P51828 1080 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 STAT2P52630 851 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SPP2Q13103 211 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZNF460Q14592 562 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SLC39A14Q15043 492 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SEPT7Q16181 437 aaKnown RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 CAMK4Q16566 473 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ANKRD39Q53RE8 183 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 RILPL1Q5EBL4 403 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SPECC1Q5M775 1068 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 RNF219Q5W0B1 726 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 CCDC174Q6PII3 467 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 BTNL9Q6UXG8 535 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 CCDC73Q6ZRK6 1079 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 MOB2Q70IA6 237 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ALYREFQ86V81 257 aaKnown RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 FBXO11Q86XK2 927 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 WFDC8Q8IUA0 241 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 DMRTC2Q8IXT2 367 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 SCYL3Q8IZE3 742 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 DAGLBQ8NCG7 672 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 RNF214Q8ND24 703 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 BVESQ8NE79 360 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZNF507Q8TCN5 953 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 CCDC12Q8WUD4 166 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 CYB5D2Q8WUJ1 264 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 MRPS27Q92552 414 aaKnown RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 SYAP1Q96A49 352 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 HOOK2Q96ED9 719 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SCLYQ96I15 445 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZMYND12Q9H0C1 365 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.67□□□□□ -1.66
CD44-226ENST00000527889 TAF1DQ9H5J8 278 aaPredicted RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 SH2D4AQ9H788 454 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 C6orf50Q9HD87 102 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 PICK1Q9NRD5 415 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms