RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ZNF200P98182 395 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 PTPN11Q06124 597 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 MAPK8IP2Q13387 824 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 SPA17Q15506 151 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 FAM187BQ17R55 369 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 FAM47CQ5HY64 1035 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 CCDC122Q5T0U0 273 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 KLHDC7AQ5VTJ3 777 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 SLC39A4Q6P5W5 647 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 RUFY4Q6ZNE9 571 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 SCLT1Q96NL6 688 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 PCIF1Q9H4Z3 704 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.49■□□□□ 0.87
VPS28-207ENST00000526977 MRFAP1Q9Y605 127 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 V9GYY5 206 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 MBTD1Q05BQ5 628 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 ITGA7Q13683 1181 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 PKN2Q16513 984 aaKnown RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 GBP6Q6ZN66 633 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 DNAJB3Q8WWF6 145 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 JAKMIP2Q96AA8 810 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 ZNF668Q96K58 619 aaPredicted RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 TARS2Q9BW92 718 aaKnown RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 ADAMTS10Q9H324 1103 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 AIPL1Q9NZN9 384 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 SSU72P8A0A1W2PR75 194 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 GTPBP10A4D1E9 387 aaKnown RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 GDF6Q6KF10 455 aaPredicted RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 CARD6Q9BX69 1037 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 GCOM2Q9BZD3 368 aaPredicted RBP20.48■□□□□ 0.87
VPS28-207ENST00000526977 RNF208Q9H0X6 261 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 DEF6Q9H4E7 631 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 KIAA1586Q9HCI6 787 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 PCDHA13Q9Y5I0 950 aa20.48■□□□□ 0.87
VPS28-207ENST00000526977 GRIN2DO15399 1336 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 CTAGE9A4FU28 777 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 KBTBD13C9JR72 458 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 AKR1B10O60218 316 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 GPR32O75388 356 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 TOM1L1O75674 476 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 SERPING1P05155 500 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 CCL5P13501 91 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 UCHL3P15374 230 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 CTCFP49711 727 aaPredicted RBP20.47■□□□□ 0.87
VPS28-207ENST00000526977 VAV2P52735 878 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 PRPF4BQ13523 1007 aaKnown RBP20.47■□□□□ 0.87
VPS28-207ENST00000526977 PCBP1Q15365 356 aaKnown RBP eCLIP20.47■□□□□ 0.87
VPS28-207ENST00000526977 FBXO46Q6PJ61 603 aaPredicted RBP20.47■□□□□ 0.87
VPS28-207ENST00000526977 RSPH3Q86UC2 560 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 ACO2Q99798 780 aaKnown RBP20.47■□□□□ 0.87
VPS28-207ENST00000526977 MINDY3Q9H8M7 445 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 SIX2Q9NPC8 291 aa20.47■□□□□ 0.87
VPS28-207ENST00000526977 KRT86O43790 486 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 RRP9O43818 475 aaKnown RBP20.46■□□□□ 0.87
VPS28-207ENST00000526977 LDHAP00338 332 aaKnown RBP20.46■□□□□ 0.87
VPS28-207ENST00000526977 MTFR1Q15390 333 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 KIZQ2M2Z5 673 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 TSHZ1Q6ZSZ6 1077 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 INTS8Q75QN2 995 aaKnown RBP20.46■□□□□ 0.87
VPS28-207ENST00000526977 RDH13Q8NBN7 331 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 FBXL18Q96ME1 805 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 SEZ6LQ9BYH1 1024 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 PHF24Q9UPV7 400 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 DUSP10Q9Y6W6 482 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 CLDN3O15551 220 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 RPAINQ86UA6 219 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 SERINC5Q86VE9 423 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 DEFB118Q96PH6 123 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 PPP1R16BQ96T49 567 aa20.46■□□□□ 0.87
VPS28-207ENST00000526977 DNM1LO00429 736 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 KRT13P13646 458 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 FMO5P49326 533 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 LBX1P52954 281 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 RAPGEF1Q13905 1077 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 GPD1LQ8N335 351 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 NAPGQ99747 312 aaPredicted RBP20.45■□□□□ 0.86
VPS28-207ENST00000526977 GCNT4Q9P109 453 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 FBXL5Q9UKA1 691 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 AGO2Q9UKV8 859 aaKnown RBP20.45■□□□□ 0.86
VPS28-207ENST00000526977 FHOD1Q9Y613 1164 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 SIP14410 1827 aa20.45■□□□□ 0.86
VPS28-207ENST00000526977 A0A0B4J269 797 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 EDN1P05305 212 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 IQCF3P0C7M6 154 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 TMEM62Q0P6H9 643 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 KIF5AQ12840 1032 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 SNRNP35Q16560 246 aaKnown RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 PTGISQ16647 500 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 ERCC6LQ2NKX8 1250 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 MTERF4Q7Z6M4 381 aaKnown RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 MNS1Q8NEH6 495 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 TCHPQ9BT92 498 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 IFIH1Q9BYX4 1025 aaKnown RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 STARD7Q9NQZ5 370 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 OGDHLQ9ULD0 1010 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 TNFSF13BQ9Y275 285 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 USP20Q9Y2K6 914 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 A0A1W2PQ45 241 aaPredicted RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 A0A1W2PQY0 241 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 EXTL3O43909 919 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms