RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 MYH11P35749 1972 aa22.96■■□□□ 1.27
VPS28-203ENST00000524521 F8W810 466 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 THP07101 528 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 SSTR3P32745 418 aaPredicted RBP22.95■■□□□ 1.26
VPS28-203ENST00000524521 ZNF568Q3ZCX4 644 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 TMEM184AQ6ZMB5 413 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 ZBTB33Q86T24 672 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 MYCT1Q8N699 235 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 RABGGTAQ92696 567 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 ZNF396Q96N95 335 aaPredicted RBP22.95■■□□□ 1.26
VPS28-203ENST00000524521 CXCL16Q9H2A7 254 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 CD320Q9NPF0 282 aa22.95■■□□□ 1.26
VPS28-203ENST00000524521 PTGESO14684 152 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 FAM13AO94988 1023 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 PDIA4P13667 645 aaKnown RBP22.94■■□□□ 1.26
VPS28-203ENST00000524521 TXLNAP40222 546 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 STK38Q15208 465 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 TAS1R1Q7RTX1 841 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 GJD3Q8N144 294 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 KRI1Q8N9T8 703 aaKnown RBP22.94■■□□□ 1.26
VPS28-203ENST00000524521 SMRP1Q8NCR6 262 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 CDT1Q9H211 546 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 ZHX3Q9H4I2 956 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 PTPRHQ9HD43 1115 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 HCFC2Q9Y5Z7 792 aa22.94■■□□□ 1.26
VPS28-203ENST00000524521 SOD2P04179 222 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 MAPTP10636 758 aaKnown RBP22.93■■□□□ 1.26
VPS28-203ENST00000524521 NASPP49321 788 aaPredicted RBP22.93■■□□□ 1.26
VPS28-203ENST00000524521 OSTNP61366 133 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 TUSC3Q13454 348 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 PTPN14Q15678 1187 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 RRAGBQ5VZM2 374 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 ANKRD54Q6NXT1 300 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 HAUS6Q7Z4H7 955 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 CEP120Q8N960 986 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 CASP10Q92851 521 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 ZBTB45Q96K62 511 aaPredicted RBP22.93■■□□□ 1.26
VPS28-203ENST00000524521 CCDC94Q9BW85 323 aaPredicted RBP22.93■■□□□ 1.26
VPS28-203ENST00000524521 APOL5Q9BWW9 433 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 MRPL17Q9NRX2 175 aaKnown RBP22.93■■□□□ 1.26
VPS28-203ENST00000524521 CACNG4Q9UBN1 327 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 PRKAG3Q9UGI9 489 aa22.93■■□□□ 1.26
VPS28-203ENST00000524521 CASTOR2A6NHX0 329 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 H0YCG3 227 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 C2CD2LO14523 706 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 TADA2AO75478 443 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 ZSCAN22P10073 491 aaPredicted RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 MCF2P10911 925 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 HARSP12081 509 aaKnown RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 GRM5P41594 1212 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 YARSP54577 528 aaKnown RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 NCKAP1LP55160 1127 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 FOXD4L6Q3SYB3 417 aaPredicted RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 MPZL3Q6UWV2 235 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 FOXD4L3Q6VB84 417 aaPredicted RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 ADHFE1Q8IWW8 467 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 LINC00301Q8NCQ3 95 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 PAAF1Q9BRP4 392 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 HERC2P3Q9BVR0 1158 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 EMILIN2Q9BXX0 1053 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 PANK2Q9BZ23 570 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 PARVGQ9HBI0 331 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 STK17AQ9UEE5 414 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 ADAM28Q9UKQ2 775 aa22.92■■□□□ 1.26
VPS28-203ENST00000524521 USP15Q9Y4E8 981 aaPredicted RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 MORC2Q9Y6X9 1032 aaPredicted RBP22.92■■□□□ 1.26
VPS28-203ENST00000524521 TBCAO75347 108 aaKnown RBP22.91■■□□□ 1.26
VPS28-203ENST00000524521 URODP06132 367 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 PROZP22891 400 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 KLRC2P26717 231 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 ZP2Q05996 745 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 HSP90AA2PQ14568 343 aaPredicted RBP22.91■■□□□ 1.26
VPS28-203ENST00000524521 KIAA1841Q6NSI8 718 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 SYCE2Q6PIF2 218 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 KLHL5Q96PQ7 755 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 SSX2IPQ9Y2D8 614 aa22.91■■□□□ 1.26
VPS28-203ENST00000524521 SPTLC2O15270 562 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 TRAK2O60296 914 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 LILRB3O75022 631 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 TOM1L1O75674 476 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 CNPP09543 421 aaKnown RBP22.9■■□□□ 1.26
VPS28-203ENST00000524521 HOXB8P17481 243 aaPredicted RBP22.9■■□□□ 1.26
VPS28-203ENST00000524521 MATR3P43243 847 aaKnown RBP eCLIP22.9■■□□□ 1.26
VPS28-203ENST00000524521 ZNF131P52739 623 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 NAB2Q15742 525 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 GLRA4Q5JXX5 417 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 FUT10Q6P4F1 479 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 BICD1Q96G01 975 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 GPR62Q9BZJ7 368 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 S1PR5Q9H228 398 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 TOPORSQ9NS56 1045 aaPredicted RBP22.9■■□□□ 1.26
VPS28-203ENST00000524521 ANKFY1Q9P2R3 1169 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 BDP1A6H8Y1 2624 aa22.9■■□□□ 1.26
VPS28-203ENST00000524521 K7ENM7 598 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 ABLIM1O14639 778 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 EFEMP2O95967 443 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 F13A1P00488 732 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 EPCAMP16422 314 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 GLUD2P49448 558 aa22.89■■□□□ 1.25
VPS28-203ENST00000524521 TPRNQ4KMQ1 711 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms