RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 RASSF2P50749 326 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 PLTPP55058 493 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 ARHGAP4P98171 946 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 EPHA7Q15375 998 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 KCTD19Q17RG1 926 aaPredicted RBP8.96□□□□□ -0.98
CSMD1-213ENST00000523488 Q4G0T1 1027 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 DUS1LQ6P1R4 473 aaKnown RBP8.96□□□□□ -0.98
CSMD1-213ENST00000523488 AAGABQ6PD74 315 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 KRT28Q7Z3Y7 464 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 TICAM1Q8IUC6 712 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 DCAF5Q96JK2 942 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 SPZ1Q9BXG8 430 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 CADM1Q9BY67 442 aaKnown RBP8.96□□□□□ -0.98
CSMD1-213ENST00000523488 NR2E1Q9Y466 385 aa8.96□□□□□ -0.98
CSMD1-213ENST00000523488 PMM2O15305 246 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 DENRO43583 198 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PRDM1O75626 825 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 EIF4BP23588 611 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 RPL21P46778 160 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 SLC29A2Q14542 456 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ANKS1BQ7Z6G8 1248 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PRELID2Q8N945 189 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 SNRNP27Q8WVK2 155 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 STON2Q8WXE9 905 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TUBGCP5Q96RT8 1024 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TMEM60Q9H2L4 133 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 CCDC87Q9NVE4 849 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 FAIMQ9NVQ4 179 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 MTRF1LQ9UGC7 380 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PPME1Q9Y570 386 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 E9PBE3 544 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 RASGRF2O14827 1237 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ADAMTS2O95450 1211 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PSMG1O95456 288 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF24P17028 368 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TATP17735 454 aaPredicted RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 EPS15P42566 896 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 WDR4P57081 412 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 MCL1Q07820 350 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TTC27Q6P3X3 843 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF449Q6P9G9 518 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 UGT2A3Q6UWM9 527 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 FAM47EQ6ZV65 393 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 MARK2Q7KZI7 788 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PEX26Q7Z412 305 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PDSS2Q86YH6 399 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 BBS5Q8N3I7 341 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 GDAP1Q8TB36 358 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 BIRC8Q96P09 236 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 KIAA1683Q9H0B3 1180 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 INIPQ9NRY2 104 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TMED5Q9Y3A6 229 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 COL4A3BPQ9Y5P4 624 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 KLF11O14901 512 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 SLC16A3O15427 465 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 HNRNPCP07910 306 aaKnown RBP eCLIP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 MARK3P27448 753 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 NR1H3Q13133 447 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 KHDC1Q4VXA5 237 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PIK3AP1Q6ZUJ8 805 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 FRMD5Q7Z6J6 570 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 CCDC25Q86WR0 208 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ZBED8Q8IZ13 594 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 PIP4K2CQ8TBX8 421 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ESR2Q92731 530 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 DDX12PQ92771 950 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 STMN2Q93045 179 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 GFM2Q969S9 779 aaKnown RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF594Q96JF6 807 aaPredicted RBP8.95□□□□□ -0.98
CSMD1-213ENST00000523488 GRID1Q9ULK0 1009 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TMEM98Q9Y2Y6 226 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 TNKSO95271 1327 aa8.95□□□□□ -0.98
CSMD1-213ENST00000523488 ATP9AO75110 1047 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 PLEKHA8P1O95397 391 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 CABP4P57796 275 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 CAV1Q03135 178 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 KLHL30Q0D2K2 578 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 PTK6Q13882 451 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 ACSBG2Q5FVE4 666 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 BARGINQ6ZT62 677 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 SH2D5Q6ZV89 423 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 OTUD6AQ7L8S5 288 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 NET1Q7Z628 596 aaPredicted RBP8.94□□□□□ -0.98
CSMD1-213ENST00000523488 MARVELD2Q8N4S9 558 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 ZBTB38Q8NAP3 1195 aaPredicted RBP8.94□□□□□ -0.98
CSMD1-213ENST00000523488 GAB3Q8WWW8 586 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 SGF29Q96ES7 293 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 MBOAT7Q96N66 472 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 CELF4Q9BZC1 486 aaKnown RBP8.94□□□□□ -0.98
CSMD1-213ENST00000523488 MAF1Q9H063 256 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 BRD8Q9H0E9 1235 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 SYNCQ9H7C4 482 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 KCNK13Q9HB14 408 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 V9GY48 417 aaPredicted RBP8.94□□□□□ -0.98
CSMD1-213ENST00000523488 SYNGAP1Q96PV0 1343 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 IRS2Q9Y4H2 1338 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 PTPRFP10586 1907 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 SOBPA7XYQ1 873 aa8.94□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF189O75820 626 aaPredicted RBP8.94□□□□□ -0.98
CSMD1-213ENST00000523488 OATP04181 439 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms