RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 NRG4Q8WWG1 115 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 ARL8AQ96BM9 186 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 COA7Q96BR5 231 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 IL17RAQ96F46 866 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 OR14A2Q96R54 314 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 C7orf25Q9BPX7 421 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 MANSC1Q9H8J5 431 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 DMRT3Q9NQL9 472 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 TRPS1Q9UHF7 1281 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 IP6K2Q9UHH9 426 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 ST6GALNAC2Q9UJ37 374 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZNF180Q9UJW8 692 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 INTUQ9ULD6 942 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 EID1Q9Y6B2 187 aa4.32□□□□□ -1.72
HMGB1P41-201ENST00000520234 TTBK1Q5TCY1 1321 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 HOXA3O43365 443 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 FOXS1O43638 330 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZRANB2O95218 330 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 CASRP41180 1078 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 FKBP15Q5T1M5 1219 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 PPP4R3AQ6IN85 833 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 Q6ZVL8 140 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 FUKQ8N0W3 1084 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 PQLC1Q8N2U9 271 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 LILRA3Q8N6C8 439 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 JPH3Q8WXH2 748 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 UHRF1Q96T88 793 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 PDCD2LQ9BRP1 358 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 RHOBTB2Q9BYZ6 727 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZIM2Q9NZV7 527 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 IPPQ9Y573 584 aa4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 CFAP20Q9Y6A4 193 aaKnown RBP4.31□□□□□ -1.72
HMGB1P41-201ENST00000520234 HTRA2O43464 458 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 SGTAO43765 313 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 DTNBO60941 627 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 MFAP3LO75121 409 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZNF623O75123 536 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 PF4V1P10720 104 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 IL2RBP14784 551 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 COMTP21964 271 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CYP2C19P33261 490 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 MSX2P35548 267 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 SREBF1P36956 1147 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 NANOS3P60323 173 aaKnown RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 APBA1Q02410 837 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 FOXL1Q12952 345 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 SP140Q13342 867 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 GTF2H3Q13889 308 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 SEPT2Q15019 361 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 PPP2R5AQ15172 486 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 UAP1L1Q3KQV9 507 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 RRP12Q5JTH9 1297 aaKnown RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CXorf57Q6NSI4 855 aaKnown RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZNF572Q7Z3I7 529 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 APBB1IPQ7Z5R6 666 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CHPFQ8IZ52 775 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 ANKRD35Q8N283 1001 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 D2HGDHQ8N465 521 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CASKIN2Q8WXE0 1202 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 FAM89AQ96GI7 184 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 ZNF512Q96ME7 567 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 RTFDC1Q9BY42 306 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 LANCL2Q9NS86 450 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 MOCS1Q9NZB8 636 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 G3BP2Q9UN86 482 aaKnown RBP4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 LIMCH1Q9UPQ0 1083 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CLCA2Q9UQC9 943 aa4.3□□□□□ -1.72
HMGB1P41-201ENST00000520234 CCDC154A6NI56 674 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 B5MCH6 92 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 CYP27B1O15528 508 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 TEX33O43247 280 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 IPO13O94829 963 aaKnown RBP4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 POU2F2P09086 479 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 EDNRBP24530 442 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 PTPN7P35236 360 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 FLT3LGP49771 235 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 PTH1RQ03431 593 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 FAM47AQ5JRC9 791 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 METTL24Q5JXM2 366 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 PRAMEF14Q5SWL7 426 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 NXNQ6DKJ4 435 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 DOK3Q7L591 496 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 FAM83AQ86UY5 434 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 TRMT2AQ8IZ69 625 aaKnown RBP4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 OR2I1PQ8NGU4 316 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 Q8TCH9 128 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 DPF2Q92785 391 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 EDAQ92838 391 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 CHFRQ96EP1 664 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 TMEM176AQ96HP8 235 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 AIFM3Q96NN9 605 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 SENP6Q9GZR1 1112 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 EPC1Q9H2F5 836 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 TDP1Q9NUW8 608 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 TMEM140Q9NV12 185 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 KLHL42Q9P2K6 505 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 SIK3Q9Y2K2 1263 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 SH3BP1Q9Y3L3 701 aa4.29□□□□□ -1.72
HMGB1P41-201ENST00000520234 PJA2O43164 708 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms