RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 RFX1P22670 979 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 LSP1P33241 339 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MDH1P40925 334 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 CDR1P51861 262 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MRPS25P82663 173 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 HLTFQ14527 1009 aaKnown RBP eCLIP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 PPP2R5AQ15172 486 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 AGBL2Q5U5Z8 902 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MAP4K3Q8IVH8 894 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 KLHL7Q8IXQ5 586 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SLC10A4Q96EP9 437 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SAAL1Q96ER3 474 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 PCYT2Q99447 389 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 STK33Q9BYT3 514 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 ATP6V0A4Q9HBG4 840 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 AMFRQ9UKV5 643 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 PLAAQ9Y263 795 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 CEP350Q5VT06 3117 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MYH9P35579 1960 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 GSTTP1A0A1W2PQM5 241 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 KRIT1O00522 736 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SART1O43290 800 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 LRRN2O75325 713 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 CELF2O95319 508 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 GGPS1O95749 300 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 CNGA1P29973 690 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 GUCY2FP51841 1108 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 POLGP54098 1239 aaPredicted RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 ERVK-9P63128 1117 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MYL7Q01449 175 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MYBPC2Q14324 1141 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 KCTD2Q14681 263 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 EMC2Q15006 297 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 CST9Q5W186 159 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SLC39A4Q6P5W5 647 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SUGP1Q8IWZ8 645 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 C12orf56Q8IXR9 622 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MICALL1Q8N3F8 863 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 XXYLT1Q8NBI6 393 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MCPH1Q8NEM0 835 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 PLEKHO2Q8TD55 490 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 SEC14L1Q92503 715 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 TMEM143Q96AN5 459 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 MMP19Q99542 508 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 NTPCRQ9BSD7 190 aaKnown RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 POLR3FQ9H1D9 316 aaPredicted RBP11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 PLEKHA4Q9H4M7 779 aa11.87□□□□□ -0.51
SH3RF1-203ENST00000508685 DNAJC25-GNG10A0A024R161 153 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 IGKV6D-21A0A0A0MT36 114 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TMCO5BA8MYB1 307 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 ADRB2P07550 413 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TMEM253P0C7T8 217 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TCF7P36402 384 aaPredicted RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 EIF3BP55884 814 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 PPP3CAQ08209 521 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 PDCLQ13371 301 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 HSDL1Q3SXM5 330 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 CEP85LQ5SZL2 805 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 C1orf220Q5T0J3 134 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TMEM63BQ5T3F8 832 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 INTS8Q75QN2 995 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TAS1R3Q7RTX0 852 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 PACS2Q86VP3 889 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TRIM50Q86XT4 487 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 CBWD2Q8IUF1 395 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 FBXO16Q8IX29 292 aaPredicted RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 METTL13Q8N6R0 699 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 TMEM174Q8WUU8 243 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 SPIRE2Q8WWL2 714 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 HES6Q96HZ4 224 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 RNPC3Q96LT9 517 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 RAB17Q9H0T7 212 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 USP20Q9Y2K6 914 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 UTP11Q9Y3A2 253 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 NCANO14594 1321 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 EMSYQ7Z589 1322 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 MCM3APO60318 1980 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 ESYT3A0FGR9 886 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 HNRNPDLO14979 420 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 MEFVO15553 781 aaPredicted RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 KRT13P13646 458 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 GBP1P32455 592 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 SOX5P35711 763 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 GCLMP48507 274 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 VAMP7P51809 220 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 DRP2Q13474 957 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 NEDD9Q14511 834 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 SNRNP35Q16560 246 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 PTGISQ16647 500 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 KCTD16Q68DU8 428 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 METTL7BQ6UX53 244 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 MMS22LQ6ZRQ5 1243 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 CROCCP2Q86T23 111 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 OTUD6BQ8N6M0 293 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 DNAJC5GQ8N7S2 189 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 SLC17A8Q8NDX2 589 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 INTS2Q9H0H0 1204 aaKnown RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 C17orf75Q9HAS0 396 aa11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 PACSIN2Q9UNF0 486 aaPredicted RBP11.86□□□□□ -0.51
SH3RF1-203ENST00000508685 NOC2LQ9Y3T9 749 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms