RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 AACSQ86V21 672 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 DIO2Q92813 273 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 ZKSCAN4Q969J2 545 aaPredicted RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 PPP1R14AQ96A00 147 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 BACH2Q9BYV9 841 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 R3HDMLQ9H3Y0 253 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 PIH1D3Q9NQM4 214 aaKnown RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 RNF186Q9NXI6 227 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 LRP2BPQ9P2M1 347 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 APEX2Q9UBZ4 518 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 DBNLQ9UJU6 430 aaKnown RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 DDX19BQ9UMR2 479 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 ZNF646O15015 1829 aaPredicted RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 PSME4Q14997 1843 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 BCL6P41182 706 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 BTDP43251 543 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 RGS3P49796 1198 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 FKBP1BP68106 108 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 TNFAIP1Q13829 316 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 CCDC158Q5M9N0 1113 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 TEPPQ6URK8 271 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 RPAP2Q8IXW5 612 aaPredicted RBP5.51□□□□□ -1.53
NUP54-206ENST00000508465 ZNF654Q8IZM8 581 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 Q8N1Y9 231 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 ZNF513Q8N8E2 541 aaPredicted RBP5.51□□□□□ -1.53
NUP54-206ENST00000508465 Q8TCH9 128 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 FRS2Q8WU20 508 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 NSUN4Q96CB9 384 aaKnown RBP5.51□□□□□ -1.53
NUP54-206ENST00000508465 WWC2-AS2Q96NR7 200 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 PTPN18Q99952 460 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 NKX2-4Q9H2Z4 354 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 GPR108Q9NPR9 543 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 DDX4Q9NQI0 724 aaKnown RBP5.51□□□□□ -1.53
NUP54-206ENST00000508465 TMOD2Q9NZR1 351 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 DDX41Q9UJV9 622 aaKnown RBP5.51□□□□□ -1.53
NUP54-206ENST00000508465 PCDHB4Q9Y5E5 795 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 PPP2R3BQ9Y5P8 575 aa5.51□□□□□ -1.53
NUP54-206ENST00000508465 MAST3O60307 1309 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 SALL1Q9NSC2 1324 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 HMMRO75330 724 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 IFIT2P09913 472 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 TM4SF4P48230 202 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 RRP1P56182 461 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 DYNLL1P63167 89 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 RACK1P63244 317 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 PAK2Q13177 524 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 PICALMQ13492 652 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 FHL2Q14192 279 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 PRKD1Q15139 912 aaPredicted RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 FKBP1CQ5VVH2 108 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 STEAP3Q658P3 488 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 NAA16Q6N069 864 aaPredicted RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 ADGRA1Q86SQ6 560 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 FAM83AQ86UY5 434 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 TRIM59Q8IWR1 403 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 ZGPATQ8N5A5 531 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 ARRDC4Q8NCT1 418 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 NPLOC4Q8TAT6 608 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 CPLX3Q8WVH0 158 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 FAM151AQ8WW52 585 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 ZCCHC14Q8WYQ9 949 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 OPTNQ96CV9 577 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 EDC3Q96F86 508 aaKnown RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 WNK4Q96J92 1243 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 CHAMP1Q96JM3 812 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 ING1Q9UK53 422 aaPredicted RBP5.5□□□□□ -1.53
NUP54-206ENST00000508465 SSC5DA1L4H1 1573 aa5.5□□□□□ -1.53
NUP54-206ENST00000508465 MROH7-TTC4A0A0A0MT08 1334 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 GPR75-ASB3A0A0A6YYF3 556 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 TCRBV5S2A0A599 114 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 DDTLA6NHG4 134 aaPredicted RBP5.49□□□□□ -1.53
NUP54-206ENST00000508465 H7BY64 318 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 GOLIM4O00461 696 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 MAFKO60675 156 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 RAB11FIP3O75154 756 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 WDHD1O75717 1129 aaPredicted RBP5.49□□□□□ -1.53
NUP54-206ENST00000508465 IDH1O75874 414 aaKnown RBP5.49□□□□□ -1.53
NUP54-206ENST00000508465 CHGBP05060 677 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 LDHCP07864 332 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 HOXC12P31275 282 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 RHBDL3P58872 404 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 GSTO1P78417 241 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 KCNAB2Q13303 367 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 FOXE3Q13461 319 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 VGLL4Q14135 290 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 SLC4A8Q2Y0W8 1093 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 HSP90AB4PQ58FF6 505 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 TSHZ3Q63HK5 1081 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 ERC1Q8IUD2 1116 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 TEX11Q8IYF3 940 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 ANKRD13AQ8IZ07 590 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 CLASRPQ8N2M8 674 aaKnown RBP5.49□□□□□ -1.53
NUP54-206ENST00000508465 MIGA1Q8NAN2 632 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 KIF1BPQ96EK5 621 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 DNAJC2Q99543 621 aaKnown RBP5.49□□□□□ -1.53
NUP54-206ENST00000508465 BOLA2Q9H3K6 86 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 SEC61A2Q9H9S3 476 aa5.49□□□□□ -1.53
NUP54-206ENST00000508465 AATFQ9NY61 560 aaKnown RBP eCLIP5.49□□□□□ -1.53
NUP54-206ENST00000508465 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms