RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 FRMD4BQ9Y2L6 1034 aa7.85□□□□□ -1.15
NUP54-204ENST00000506098 ATG2AQ2TAZ0 1938 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PDE4DIPQ5VU43 2346 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PLXNA4Q9HCM2 1894 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 TRIM43BA6NCK2 446 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 ZNF233A6NK53 670 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 KCNJ18B7U540 433 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 MGEA5O60502 916 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 EXOC3O60645 756 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 ZNF623O75123 536 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 EPB41P11171 864 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 ATP1A3P13637 1013 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 GRM5P41594 1212 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 CLDN10P78369 228 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PLCB2Q00722 1185 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PPP2R3AQ06190 1150 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 KCNJ12Q14500 433 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 KRT31Q15323 416 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 SNRNP35Q16560 246 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 CEP135Q66GS9 1140 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 INTS8Q75QN2 995 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 MRPL10Q7Z7H8 261 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 RTN4RL1Q86UN2 441 aaPredicted RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 BRSK2Q8IWQ3 736 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 FAM186BQ8IYM0 893 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 TMC2Q8TDI7 906 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PARD3BQ8TEW8 1205 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 APBB2Q92870 758 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 TRIM43Q96BQ3 446 aaPredicted RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 VWCEQ96DN2 955 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 SAAL1Q96ER3 474 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 EEF2KMTQ96G04 330 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 TCHPQ9BT92 498 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 FTHL17Q9BXU8 183 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 IFIH1Q9BYX4 1025 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 GRPEL1Q9HAV7 217 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 RGS18Q9NS28 235 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 ANKFY1Q9P2R3 1169 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 PIN4Q9Y237 131 aaKnown RBP7.84□□□□□ -1.15
NUP54-204ENST00000506098 MYO9BQ13459 2157 aa7.84□□□□□ -1.15
NUP54-204ENST00000506098 COL4A6Q14031 1691 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 ZNF638Q14966 1978 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 CEP290O15078 2479 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 A0A0U1RQF3 1178 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 GOLGA8IPA6NC78 632 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 GOLGA8JA6NMD2 632 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 PMM2O15305 246 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 AP5Z1O43299 807 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 IL18RAPO95256 599 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 NPTXRO95502 500 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CLTAP09496 248 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 STAG3L1P0CL83 205 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 SKIP12755 728 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 ZSCAN20P17040 1043 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 ITGB8P26012 769 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CYP2C18P33260 490 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TNFSF9P41273 254 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 MATR3P43243 847 aaKnown RBP eCLIP7.83□□□□□ -1.161e-9■■■■□ 19.8
NUP54-204ENST00000506098 ACOT2P49753 483 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 MRE11P49959 708 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 RAB27AP51159 221 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 COPB1P53618 953 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 CCL23P55773 120 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 FAM189BP81408 668 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 FANCCQ00597 558 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CYP24A1Q07973 514 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 BFSP1Q12934 665 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 NFX1Q12986 1120 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 PSMD6Q15008 389 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 SURF1Q15526 300 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 MAN2A1Q16706 1144 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CCDC40Q4G0X9 1142 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 XKR4Q5GH76 650 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 MIIPQ5JXC2 388 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 ZBTB41Q5SVQ8 909 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 C1orf220Q5T0J3 134 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TAF3Q5VWG9 929 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TWF2Q6IBS0 349 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 MFSD5Q6N075 450 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 ALKAL1Q6UXT8 129 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 ZBTB33Q86T24 672 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CDR2LQ86X02 465 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 CBWD2Q8IUF1 395 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 CEP120Q8N960 986 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 RDH13Q8NBN7 331 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 SMG8Q8ND04 991 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 ANKRD20A12PQ8NF67 263 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 DBF4BQ8NFT6 615 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 SEPT8Q92599 483 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 SECISBP2LQ93073 1101 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 TRIM44Q96DX7 344 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 SCLYQ96I15 445 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TSPAN18Q96SJ8 248 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 FAM213AQ9BRX8 229 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TUBGCP2Q9BSJ2 902 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 HTATIP2Q9BUP3 242 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 EIF2AQ9BY44 585 aaKnown RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 PPP1R12CQ9BZL4 782 aa7.83□□□□□ -1.16
NUP54-204ENST00000506098 TSPYL2Q9H2G4 693 aaPredicted RBP7.83□□□□□ -1.16
NUP54-204ENST00000506098 PLEKHA5Q9HAU0 1116 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms