RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 MTCL1Q9Y4B5 1905 aaKnown RBP23.25■■□□□ 1.31
SQSTM1-210ENST00000506042 TRAPPC3O43617 180 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 FSHRP23945 695 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 GNL2Q13823 731 aaKnown RBP23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 AMHR2Q16671 573 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 FAM187BQ17R55 369 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 PPM1LQ5SGD2 360 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 PHLDB3Q6NSJ2 640 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 GLYCTKQ8IVS8 523 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 PIGOQ8TEQ8 1089 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 GTF3C6Q969F1 213 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 BORCS6Q96GS4 357 aa23.24■■□□□ 1.31
SQSTM1-210ENST00000506042 ARHGEF35A5YM69 484 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 PAPLNO95428 1278 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 EFEMP2O95967 443 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 SPATA31D3P0C874 917 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 MUTP22033 750 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 HOXA9P31269 272 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 EFNA5P52803 228 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 PSMD5Q16401 504 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 DCAF4L1Q3SXM0 396 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 SPATA31D4Q6ZUB0 917 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 ERMP1Q7Z2K6 904 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 CEP57Q86XR8 500 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 ADSSL1Q8N142 457 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 GPR62Q9BZJ7 368 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 ARHGEF3Q9NR81 526 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 GJB4Q9NTQ9 266 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 MIOSQ9NXC5 875 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 KLK14Q9P0G3 267 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 CA14Q9ULX7 337 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 SIT1Q9Y3P8 196 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 PHLPP2Q6ZVD8 1323 aa23.23■■□□□ 1.31
SQSTM1-210ENST00000506042 NAMPTP43490 491 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 PFKPQ01813 784 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 FAM171A1Q5VUB5 890 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 MAEAQ7L5Y9 396 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 PIK3R5Q8WYR1 880 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 RAB34Q9BZG1 259 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 TBC1D17Q9HA65 648 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 SLC2A4RGQ9NR83 387 aa23.22■■□□□ 1.31
SQSTM1-210ENST00000506042 BTBD18B2RXH4 712 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 B4GALT5O43286 388 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 NPR3P17342 541 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 UVSSAQ2YD98 709 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 CDCA2Q69YH5 1023 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 DCLRE1AQ6PJP8 1040 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 TNFRSF25Q93038 417 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 ZNF707Q96C28 371 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 UROC1Q96N76 676 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 MYADMQ96S97 322 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 POLR3CQ9BUI4 534 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 POLIQ9UNA4 740 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 CACNA1HO95180 2353 aa23.21■■□□□ 1.31
SQSTM1-210ENST00000506042 POTEMA6NI47 508 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 NARSO43776 548 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 LMNAP02545 664 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 PRKCBP05771 671 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 MYBP10242 640 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 MCM7P33993 719 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 EARS2Q5JPH6 523 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 LILRA6Q6PI73 481 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 FZD8Q9H461 694 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 TOPORSQ9NS56 1045 aaPredicted RBP23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 FBXW11Q9UKB1 542 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 CDH7Q9ULB5 785 aa23.2■■□□□ 1.3
SQSTM1-210ENST00000506042 FAM205CA6NFA0 338 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 CASTOR2A6NHX0 329 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 ACKR2O00590 384 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 PI15O43692 258 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 N4BP1O75113 896 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 CTDNEP1O95476 244 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 C8AP07357 584 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 YARSP54577 528 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 CDR2LQ86X02 465 aaPredicted RBP23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 GPR152Q8TDT2 470 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 RSAD2Q8WXG1 361 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 KIFAP3Q92845 792 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 B3GALT6Q96L58 329 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 MTMR9Q96QG7 549 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 HINFPQ9BQA5 517 aa23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 NOL7Q9UMY1 257 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-210ENST00000506042 ANHXE9PGG2 379 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 RECQL4O94761 1208 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 LIG1P18858 919 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 RPA1P27694 616 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 MAGEA9P43362 315 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 ID4P47928 161 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 RBM25P49756 843 aaKnown RBP23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 HTR4Q13639 388 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 PADI6Q6TGC4 694 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 PRSS55Q6UWB4 352 aaPredicted RBP23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 CATSPER3Q86XQ3 398 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 NECAB1Q8N987 351 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 NSUN7Q8NE18 718 aaKnown RBP23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 GSTCDQ8NEC7 633 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 BCO2Q9BYV7 579 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 NUMBLQ9Y6R0 609 aa23.18■■□□□ 1.3
SQSTM1-210ENST00000506042 POU2F2P09086 479 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms