RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C5orf60A6NFR6 353 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NFIBO00712 420 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MAPK13O15264 365 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ICAM1P05362 532 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PMS2P54278 862 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MRPS9P82933 396 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TKFCQ3LXA3 575 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KCNV1Q6PIU1 500 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NIPA1Q7RTP0 329 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 UBL4BQ8N7F7 174 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PRPF38AQ8NAV1 312 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PABPC3Q9H361 631 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PGAP2Q9UHJ9 254 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 UBIAD1Q9Y5Z9 338 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ATMINO43313 823 aaPredicted RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 LYPLA2O95372 231 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 HSPA6P17066 643 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CHRNA3P32297 505 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RPL21P46778 160 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 IFFO1Q0D2I5 559 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 IFT88Q13099 833 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 BYSLQ13895 437 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MESDQ14696 234 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NBPF20Q3BBV1 942 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 UBAP2Q5T6F2 1119 aaKnown RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 EP400NLQ6ZTU2 488 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SULF1Q8IWU6 871 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 HOMEZQ8IX15 550 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SEMA4DQ92854 862 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GPBP1L1Q9HC44 474 aaPredicted RBP17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CCPG1Q9ULG6 757 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TCRBV7S2A1N4TA0A589 114 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TBC1D12O60347 775 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PYGMP11217 842 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GZMAP12544 262 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 HNRNPH1P31943 449 aaKnown RBP17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 USP8P40818 1118 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 QARSP47897 775 aaKnown RBP17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MXI1P50539 228 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 UGCGQ16739 394 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RPAINQ86UA6 219 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ZKSCAN4Q969J2 545 aaPredicted RBP17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GPRC5CQ9NQ84 441 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.28■□□□□ 0.364e-11■■■■■ 84.8
MSH5-SAPCD1-208ENST00000498473 TRPC6Q9Y210 931 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GOLGA8IPA6NC78 632 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GOLGA8JA6NMD2 632 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 BACH1O14867 736 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SLC16A4O15374 487 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CYP26A1O43174 497 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NCKAP1LP55160 1127 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FMO1Q01740 532 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 DGKZQ13574 1117 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SIX1Q15475 284 aaPredicted RBP17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 USP50Q70EL3 339 aaPredicted RBP17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SLC47A2Q86VL8 602 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MDM1Q8TC05 714 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 WNT8AQ9H1J5 351 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RASAL2Q9UJF2 1139 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PNMA2Q9UL42 364 aa17.28■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GGPS1O95749 300 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MMEP08473 750 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ADSSP30520 456 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 YWHABP31946 246 aaKnown RBP17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GHRHRQ02643 423 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CYP1B1Q16678 543 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MORC4Q8TE76 937 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SHC3Q92529 594 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 BTBD6Q96KE9 485 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SSC5DA1L4H1 1573 aa17.27■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 BRCA2P51587 3418 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ANKRD63C9JTQ0 380 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CYP1A2P05177 515 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PEX3P56589 373 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SNRPFP62306 86 aaKnown RBP17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 MAP2K1Q02750 393 aaPredicted RBP17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ACTN3Q08043 901 aaPredicted RBP17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RNF187Q5TA31 235 aaPredicted RBP17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PCNX4Q63HM2 1172 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CBWD2Q8IUF1 395 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TATDN2Q93075 761 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CEP89Q96ST8 783 aa17.27■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PODXLO00592 558 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 DRD4P21917 467 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SLC29A2Q14542 456 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ERMARDQ5T6L9 678 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CCDC137Q6PK04 289 aaKnown RBP17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 HOOK3Q86VS8 718 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 HELQQ8TDG4 1101 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CENPTQ96BT3 561 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 PGM2Q96G03 612 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SEC16BQ96JE7 1060 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 ADAM7Q9H2U9 754 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SEMA4AQ9H3S1 761 aa17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CNOT10Q9H9A5 744 aaKnown RBP17.26■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 RARAP10276 462 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 YY1P25490 414 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 TNFAIP1Q13829 316 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 SEL1L2Q5TEA6 688 aa17.25■□□□□ 0.35
MSH5-SAPCD1-208ENST00000498473 CHADLQ6NUI6 762 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms