RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 SPATA31D3P0C874 917 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RPL17P18621 184 aaKnown RBP12.86□□□□□ -0.35
VTI1A-208ENST00000494728 NAMPTP43490 491 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 PRPF4BQ13523 1007 aaKnown RBP12.86□□□□□ -0.35
VTI1A-208ENST00000494728 BMS1Q14692 1282 aaKnown RBP12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RTP2Q5QGT7 225 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 NT5DC1Q5TFE4 455 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 HAUS3Q68CZ6 603 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 SPATA31D4Q6ZUB0 917 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 TAS1R3Q7RTX0 852 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 GPR149Q86SP6 731 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 GLYCTKQ8IVS8 523 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 ZBTB8OSQ8IWT0 167 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 CEP120Q8N960 986 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 ERMNQ8TAM6 284 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 SNX29Q8TEQ0 813 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 PBXIP1Q96AQ6 731 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RIPOR3Q96MK2 946 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 PHOX2BQ99453 314 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RUSC1Q9BVN2 902 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 EMILIN2Q9BXX0 1053 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RXFP1Q9HBX9 757 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.86□□□□□ -0.35
VTI1A-208ENST00000494728 NOL7Q9UMY1 257 aaKnown RBP12.86□□□□□ -0.35
VTI1A-208ENST00000494728 NR2E1Q9Y466 385 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 COL4A3Q01955 1670 aa12.86□□□□□ -0.35
VTI1A-208ENST00000494728 RIF1Q5UIP0 2472 aaKnown RBP12.85□□□□□ -0.35
VTI1A-208ENST00000494728 ACKR2O00590 384 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 N4BP3O15049 544 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 NCBP1Q09161 790 aaKnown RBP12.85□□□□□ -0.35
VTI1A-208ENST00000494728 RABEP1Q15276 862 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 MAPK6Q16659 721 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 GLRA4Q5JXX5 417 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 PRSS55Q6UWB4 352 aaPredicted RBP12.85□□□□□ -0.35
VTI1A-208ENST00000494728 PPFIBP1Q86W92 1011 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 FBXL6Q8N531 539 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 TDRD5Q8NAT2 981 aaKnown RBP12.85□□□□□ -0.35
VTI1A-208ENST00000494728 TMEM87AQ8NBN3 555 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 DEPTORQ8TB45 409 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 ZNF707Q96C28 371 aaPredicted RBP12.85□□□□□ -0.35
VTI1A-208ENST00000494728 TMX3Q96JJ7 454 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 MFSD14AQ96MC6 490 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 C2orf40Q9H1Z8 148 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 ADAM28Q9UKQ2 775 aa12.85□□□□□ -0.35
VTI1A-208ENST00000494728 TSC2P49815 1807 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 MEFVO15553 781 aaPredicted RBP12.84□□□□□ -0.35
VTI1A-208ENST00000494728 GLUD1P00367 558 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 MUTP22033 750 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 TUSC3Q13454 348 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 HSP90AA2PQ14568 343 aaPredicted RBP12.84□□□□□ -0.35
VTI1A-208ENST00000494728 ATAT1Q5SQI0 421 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 ZBTB33Q86T24 672 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 HACE1Q8IYU2 909 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 ZDHHC14Q8IZN3 488 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 LRRC15Q8TF66 581 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 PNMA5Q96PV4 448 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 STK39Q9UEW8 545 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 LIMD1Q9UGP4 676 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 SORCS3Q9UPU3 1222 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 GDAQ9Y2T3 454 aa12.84□□□□□ -0.35
VTI1A-208ENST00000494728 DMXL1Q9Y485 3027 aa12.83□□□□□ -0.35
VTI1A-208ENST00000494728 GVINP1Q7Z2Y8 2422 aa12.83□□□□□ -0.35
VTI1A-208ENST00000494728 SPDYE4A6NLX3 237 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 ABLIM1O14639 778 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 ADAM12O43184 909 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 TGM5O43548 720 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 HIP1RO75146 1068 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 ADH1AP07327 375 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 GJB2P29033 226 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 NPTX2P47972 431 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 PEX3P56589 373 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 ATP2C1P98194 919 aaPredicted RBP12.83□□□□□ -0.36
VTI1A-208ENST00000494728 TCF15Q12870 199 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 MTMR3Q13615 1198 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 PDIA5Q14554 519 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 MCTP1Q6DN14 999 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 CD300LGQ6UXG3 332 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 C15orf39Q6ZRI6 1047 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 CCDC149Q6ZUS6 474 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 PALB2Q86YC2 1186 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 TMEM130Q8N3G9 435 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 C3orf58Q8NDZ4 430 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 CMASQ8NFW8 434 aaPredicted RBP12.83□□□□□ -0.36
VTI1A-208ENST00000494728 RIN2Q8WYP3 895 aaPredicted RBP12.83□□□□□ -0.36
VTI1A-208ENST00000494728 KIFAP3Q92845 792 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 COLEC11Q9BWP8 271 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 CDT1Q9H211 546 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 GOLGA2P5Q9HBQ8 144 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 USTQ9Y2C2 406 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 PHLPP2Q6ZVD8 1323 aa12.83□□□□□ -0.36
VTI1A-208ENST00000494728 DCHS1Q96JQ0 3298 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 PAPLNO95428 1278 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 PRPHP41219 470 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 SOX4Q06945 474 aaPredicted RBP12.82□□□□□ -0.36
VTI1A-208ENST00000494728 RAD51AP2Q09MP3 1159 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 PPP2R5AQ15172 486 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 TMEM132AQ24JP5 1023 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 USP41Q3LFD5 358 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 ATF7IP2Q5U623 682 aa12.82□□□□□ -0.36
VTI1A-208ENST00000494728 RINT1Q6NUQ1 792 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms