RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NFKBIEO00221 500 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 NR3C2P08235 984 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 VIMP08670 466 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 SSTR3P32745 418 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 SLC39A4Q6P5W5 647 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 DLK2Q6UY11 383 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 MICALCLQ6ZW33 695 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 C4orf19Q8IY42 314 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 WRNIP1Q96S55 665 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 SEMA4AQ9H3S1 761 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 KMT5AQ9NQR1 393 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 SLC12A6Q9UHW9 1150 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 KIAA1217Q5T5P2 1943 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 RGS20O76081 388 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 CHN1P15882 459 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 DR1Q01658 176 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 CYFIP1Q7L576 1253 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 NIPA1Q7RTP0 329 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 NLRX1Q86UT6 975 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 EPS8L1Q8TE68 723 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 TATDN2Q93075 761 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 MAP2K2P36507 400 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 CDR1P51861 262 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 NCKAP1LP55160 1127 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 SLC29A2Q14542 456 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 POMGNT1Q8WZA1 660 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 PWWP2AQ96N64 755 aa17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 ELAC2Q9BQ52 826 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-210ENST00000494566 LOXHD1Q8IVV2 1947 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CLSTN1O94985 981 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CCDC172P0C7W6 258 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 DMP1Q13316 513 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 SEPT14Q6ZU15 432 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CACNA2D3Q8IZS8 1091 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 MREGQ8N565 214 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CCDC26Q8TAB7 109 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 SEPT9Q9UHD8 586 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CREB1P16220 341 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 LLGL2Q6P1M3 1020 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 TCP11Q8WWU5 503 aa17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CALR3Q96L12 384 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 PRMT1Q99873 361 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 CNOT7Q9UIV1 285 aaKnown RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 COL11A1P12107 1806 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-210ENST00000494566 TRAPPC3O43617 180 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 COMTP21964 271 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 CDC25CP30307 473 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 RDXP35241 583 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 FSTL1Q12841 308 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 CUL1Q13616 776 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 BYSLQ13895 437 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 AEBP2Q6ZN18 517 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 PNMA8AQ86V59 439 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 CCDC60Q8IWA6 550 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 PARD3BQ8TEW8 1205 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 ATP8B4Q8TF62 1192 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 MOV10L1Q9BXT6 1211 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 BAIAP2L1Q9UHR4 511 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 DAAM1Q9Y4D1 1078 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 HNRNPDLO14979 420 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 TNFAIP1Q13829 316 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 SUGP1Q8IWZ8 645 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 ZDHHC14Q8IZN3 488 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 ANKRD42Q8N9B4 389 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 RNF25Q96BH1 459 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 BICD1Q96G01 975 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 FAM213AQ9BRX8 229 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 NOCTQ9UK39 431 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 PCDHA10Q9Y5I2 948 aa17.73■□□□□ 0.43
CCDC88B-210ENST00000494566 LYPLA2O95372 231 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 ACSL3O95573 720 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 PPP1R7Q15435 360 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 ZKSCAN8Q15776 578 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 MTERF2Q49AM1 385 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 DALRD3Q5D0E6 543 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 ZNF526Q8TF50 670 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 CCDC188H7C350 402 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 CLTAP09496 248 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 KRT5P13647 590 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 JAK3P52333 1124 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 SMTNP53814 917 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 WNT7BP56706 349 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 BACE1P56817 501 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 GPC5P78333 572 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 KRT76Q01546 638 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 FMO1Q01740 532 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 RUFY4Q6ZNE9 571 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 VSIG10LQ86VR7 867 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 TEX2Q8IWB9 1127 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 ARFGAP2Q8N6H7 521 aa17.72■□□□□ 0.43
CCDC88B-210ENST00000494566 FSBPO95073 299 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 MAPTP10636 758 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 POU5F1Q01860 360 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 TMEM132BQ14DG7 1078 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 HIBCHQ6NVY1 386 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 CD302Q8IX05 232 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 TBK1Q9UHD2 729 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 WDR81Q562E7 1941 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 ALCAMQ13740 583 aa17.71■□□□□ 0.43
CCDC88B-210ENST00000494566 MYBPC2Q14324 1141 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms