RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 NFKBIZQ9BYH8 718 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 FZD8Q9H461 694 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 PARP2Q9UGN5 583 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 DNM3Q9UQ16 869 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 FAM50BQ9Y247 325 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 FAN1Q9Y2M0 1017 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 CNTNAP2Q9UHC6 1331 aa11.78□□□□□ -0.52
COL6A3-214ENST00000493608 VPS37CA5D8V6 355 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 C2orf71A6NGG8 1288 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 LCE2BO14633 110 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 NRP1O14786 923 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 GFRA3O60609 400 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 EYA4O95677 639 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 ADH1BP00325 375 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 PRKCBP05771 671 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 PRPHP41219 470 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 OR1G1P47890 313 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 RAD51AP2Q09MP3 1159 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 CUL4AQ13619 759 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 SMC1AQ14683 1233 aaKnown RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 CDCA2Q69YH5 1023 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 SLC27A1Q6PCB7 646 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 Q6ZNB5 142 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 TAS1R1Q7RTX1 841 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 SCUBE3Q8IX30 993 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 RABGGTAQ92696 567 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 CCDC51Q96ER9 411 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 IFT74Q96LB3 600 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 CDCA3Q99618 268 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 VN1R3Q9BXE9 311 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 ZBP1Q9H171 429 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 UBN1Q9NPG3 1134 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 PRMT7Q9NVM4 692 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 KANSL3Q9P2N6 904 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 CACNG4Q9UBN1 327 aa11.77□□□□□ -0.53
COL6A3-214ENST00000493608 PRG3Q9Y2Y8 225 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-214ENST00000493608 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-214ENST00000493608 CCDC169A6NNP5 214 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 SFI1A8K8P3 1242 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 F8W810 466 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 CLASP2O75122 1294 aaKnown RBP11.76□□□□□ -0.53
COL6A3-214ENST00000493608 HIP1RO75146 1068 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 NAMPTP43490 491 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 ZP2Q05996 745 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 COASYQ13057 564 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 PRPF4BQ13523 1007 aaKnown RBP11.76□□□□□ -0.53
COL6A3-214ENST00000493608 KCNC3Q14003 757 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 MAPK6Q16659 721 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 FAM187BQ17R55 369 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 EEF1DP3Q658K8 133 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 RINT1Q6NUQ1 792 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 KANK3Q6NY19 840 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 DDX53Q86TM3 631 aaKnown RBP11.76□□□□□ -0.53
COL6A3-214ENST00000493608 ADHFE1Q8IWW8 467 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 COLGALT2Q8IYK4 626 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 TMEM87AQ8NBN3 555 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 SMRP1Q8NCR6 262 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 PNMA5Q96PV4 448 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 RUSC1Q9BVN2 902 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 C2orf40Q9H1Z8 148 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 CXCL16Q9H2A7 254 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 PDZD7Q9H5P4 517 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 SNTG2Q9NY99 539 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 RAPGEFL1Q9UHV5 662 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 CDH22Q9UJ99 828 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 GIT1Q9Y2X7 761 aa11.76□□□□□ -0.53
COL6A3-214ENST00000493608 USP15Q9Y4E8 981 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-214ENST00000493608 FAM86C2PA6NEL3 165 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 ACKR2O00590 384 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 C2CD2LO14523 706 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 S1PR4O95977 384 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 CTSAP10619 480 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 PEX3P56589 373 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 GRIN1Q05586 938 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 BMS1Q14692 1282 aaKnown RBP11.75□□□□□ -0.53
COL6A3-214ENST00000493608 PPP2R5AQ15172 486 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 NT5DC1Q5TFE4 455 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 ANKRD54Q6NXT1 300 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 FAM173BQ6P4H8 233 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 SYCE2Q6PIF2 218 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 C1orf186Q6ZWK4 172 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 HACE1Q8IYU2 909 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 DAW1Q8N136 415 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 C12orf76Q8N812 135 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-214ENST00000493608 GSTCDQ8NEC7 633 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 RSPH1Q8WYR4 309 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 KIFAP3Q92845 792 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 PRIMPOLQ96LW4 560 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 TMEM175Q9BSA9 504 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 CCDC113Q9H0I3 377 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 S1PR5Q9H228 398 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 GDAQ9Y2T3 454 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 HCFC2Q9Y5Z7 792 aa11.75□□□□□ -0.53
COL6A3-214ENST00000493608 MYO10Q9HD67 2058 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 NPHP3-ACAD11A0A0J9YXS1 232 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 K7ERI5 159 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 N4BP3O15049 544 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 MYBP10242 640 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 EPCAMP16422 314 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 SP100P23497 879 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms